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0dXP$4 B)‹LB D)ȋPh@(F$h ً\A;\H}[ TP4XH$\;||8l`X,4B)‹TB L)ȋXpH0F,p ًdA;\P}[\X4`P,d;||Dll;Tv'p@X4`TpGL)ЉGHHdD9};&'\X <C9|lD;\ l9lE@uJ} $pG0W@u 9g]9MpTT$$AD$\$t$D$ $tvϋ`0dD,0`+TU`CD$$CD$ D$D$ xD$D$ |$$@D$ ,D$pLHЋh4B@pXT4Gh`)Ћd0@;\P}Oىt&\X `P  dC;\|Ƌ< main: part I/O: %7.3f Total: %7.3f %5.2f Balancing Constraints: %d Empty graph. Nothing to do.%d %d %d %dReadGraph: xadjReadGraph: adjncyReadGraph: adjwgtReadGraph: vwgtFailed to open file %s %s.part.%dw%s.epart.%d%s.npart.%d%s.ipermMissing edge: (%d %d)! ReadMesh: elmntsmoc.graph.%d.%d%d %d 10 1 %d%d ------------------------------------------------------------------------------*** I detected an error in your input file *** In the first line of the file, you specified that the graph contained %d edges. However, I only found %d edges in the file. Please specify the correct number of edges in the first line of the file. *> I detected that you specified twice the number of edges that you have in the file. Remember that the number of edges specified in the first line counts each edge between vertices v and u only once. Buffer for fgets not big enough! The matrix is too big: %d [%d %d] You specified ncon=%d, but the fmt parameter does not specify vertex weights Make sure that the fmt parameter is set to either 10 or 11.Cannot read this type of file format!Problems in opening the partition file: %sProblems in opening the permutation file: %sA total of %d errors exist in the input file. Correct them, and run again! Edges (%d %d) and (%d %d) do not have the same weight! %d %d Vertex %d contains a self-loop (i.e., diagonal entry in the matrix)! Unknown mesh-element type: %d KAllocateWorkSpace: edegreesAllocateWorkSpace: maxcoreAllocateWorkSpace: vedegreesAllocateWorkSpace: pmatCreateCoarseGraph: graphError! %s***Memory allocation failed for %s. Requested size: %d bytes Timing Information ------------------------------------------------- Matching: %7.3f Contract: %7.3f Initial Partition: %7.3f Construct Separator: %7.3f Refinement: %7.3f Projection: %7.3f ******************************************************************** Multilevel: %7.3f Coarsening: %7.3f Uncoarsening: %7.3f Splitting: %7.3f AUX1: %7.3f AUX2: %7.3f AUX3: %7.3f$tIComputePartitionInfo: kpwgts%d-way Cut: %5d, Vol: %5d, Balance: (%5.3f out of %5.3f)ComputePartitionInfo: padjncyComputePartitionInfo: padjwgt Balance: %5.3f out of %5.3f ComputeElementBalance: kpwgtsMin/Max/Avg/Bal # of adjacent subdomains: %5d %5d %5.2f %7.3f Min/Max/Avg/Bal # of adjacent subdomain cuts: %5d %5d %5d %7.3f Min/Max/Avg/Bal/Frac # of interface nodes: %5d %5d %5d %7.3f %7.3f Min/Max/Avg/Bal # of adjacent subdomains: %5d %5d %5d %7.3f KMETIS: tpwgts??Initial %d-way partitioning cut: %d RefineKWay: graph->vwgtRefineKWay: graph->adjwgtp= ף?{Gzt?AllocateKWayPartitionMemory: rdata [%6d %6d], Balance: %5.3f, Nb: %6d. Nmoves: %5d, Cut: %6d, Vol: %6d Moving %6d to %3d. Gain: %4d. Cut: %6d Partitions: [%6d %6d]-[%6d %6d], Balance: %5.3f, Nv-Nb[%6d %6d]. Cut: %6d [%6d %6d], Balance: %5.3f, Nb: %6d. Cut: %6d [%6d %6d], Balance: %5.3f, Nb: %6d. Nmoves: %5d, Cut: %6d Partitions: [%6d %6d]-[%6d %6d], Balance: %5.3f, Nv-Nb[%6d %6d]. Cut: %6d [B] 333333?MocAllocateKWayPartitionMemory: npwgts [%5.4f %5.4f], Nb: %6d, Nmoves: %5d, Cut: %6d, LB: Partitions: [%5.4f %5.4f], Nv-Nb[%6d %6d]. Cut: %6d, LB: %.3f [B]{Gz?Random_KWayVolRefine: updindRandom_KWayVolRefine: markerRandom_KWayVolRefine: phtableComputeVolume: marker[%d %d %d %d] EliminateSubDomainEdges: candSomething wrong Moving %6d from %3d to %3d. Gain: [%4d %4d]. Cut: %6d, Vol: %6d VolPart: [%5d %5d]-[%5d %5d], Balance: %3.2f, Nv-Nb[%5d %5d]. Cut: %5d, Vol: %5d You just increased the maxndoms: %d %d VolPart: [%5d %5d]-[%5d %5d], Balance: %3.2f, Nv-Nb[%5d %5d]. Cut: %5d, Vol: %5d [B] CheckVolKWayPartitionParams: tmpdegrees?333333? [%6d %6d], Balance: %5.3f, Nb: %6d. Nmoves: %5d, Cut: %5d, Vol: %5d, %d [%6d %6d], Balance: %5.3f, Nb: %6d. Nmoves: %5d, Cut: %6d, %d Total adjacent subdomains: %d, Max: %d ComputeSubDomainGraph: pmatffffff?%6d %7d [%d] [%d %d] Unknown CType: %d ?ffffff?SetUpCoarseGraph: gdataSetUpCoarseGraph: nvwgtPWMETIS: mytpwgtsSetUpSplitGraph: gdataSetUpSplitGraph: nvwgt ***Cannot bisect a graph with 0 vertices! ***You are trying to partition a graph into too many parts!SetUpSplitGraph: sgraph->labelPQueueInit: queue->nodesPQueueInit: queue->bucketsUnknown refinement type: %d Allocate2WayPartitionMemory: rdataSomething wrong with part-weights: %d %d %d %d %d %d Something wrong with edegrees: %d %d %d %d %d BucketSortKeysInc: countsSetUpGraph: gdataSetUpGraph: nvwgtSetUpGraph: labelSetUpGraph2: graph->nvwgtSetUpGraph: vwgtIsConnected: touchedIsConnected: queueIsConnected: cptr[%5d %5d] %d connected components: [%5d] The graph has %d connected components in partition %d: The graph is not connected. It has %d disconnected vertices! Minimum cut: %6d, PWGTS: [%6d %6d], NBND: %6d Moved %6d from %d. [%3d %3d] %5d [%4d %4d] Partitions: [%6d %6d] T[%6d %6d], Nv-Nb[%6d %6d]. ICut: %6d [B] Something went wrong!MCHMlevelRecursiveBisection)\(?G?%6d %7d %10d [%d] [%6.4f %5.3f"<{GzUnknown norm: %d Unknown initial partition type: %d Mincut: %6d, NBND: %6d, NPwgts: Moved %6d from %d(%d). [%5d] %5d, NPwgts: ] T[%.3f %.3f], Nv-Nb[%5d, %5d]. ICut: %6d, LB: %.3f [B] Initial Cut: %d [%d] BisectGraph: bestwhereBisectGraph: perm(%.3f, %.3f) What you thought was wrong! Pulled from the interior!Parts: [ Mincut: %6d at %5d, NBND: %6d, NPwgts: [Moved %6d from %d(%d). Gain: %5d, Cut: %5d, NPwgts: ], LB: %.3f , %.3f LB: %.3f ?pABnpwgts] T[%.3f %.3f], Nv-Nb[%5d, %5d]. ICut: %6d, LB: %.3f h㈵>ACInitial Cut: %d ?] T[%.3f %.3f], Nv-Nb[%5d, %5d]. ICut: %6d, LB: ], LB: * Minimum cut: %6d at %5d, PWGTS: [%6d %6d], NBND: %6d Partitions: [%6d %6d] T[%6d %6d], Nv-Nb[%6d %6d]. ICut: %6d GrowBisectionNode: graph->rdataInitial Sep: %d BisectGraph: touchedBisectGraph: queueX?$? Minimum sep: %6d at %5d, PWGTS: [%6d %6d], NBND: %6d Moved %6d to %3d, Gain: %5d [%5d] [%4d %4d] [%5d %5d %5d] Partitions: [%6d %6d] Nv-Nb[%6d %6d]. ISep: %6d Moved %6d to %3d, Gain: %5d [%5d] [%5d %5d %5d] [%3d %2d] Partitions-N1: [%6d %6d] Nv-Nb[%6d %6d]. ISep: %6d Balanced sep: %6d at %4d, PWGTS: [%6d %6d], NBND: %6d Moved %6d to %3d, Gain: %3d, [%5d %5d %5d] Partitions: [%6d %6d] Nv-Nb[%6d %6d]. ISep: %6d [B] +3  H< % +ooob+.>N^n~·އ.>N^n~ΈވGCC: (GNU) 3.3.5 (Debian 1:3.3.5-3)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-3)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-3)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-3)",@  "$' !_IO_stdin_used../sysdeps/i386/elf/start.S/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/glibc-2.3.2/csuGNU AS 2.15q.`C0'"B3#T$0N%q"(^)B*C+T ,int-0\23E;U<400q00at+#'W~abq\0 a0|aaaYaq5qJh  qP0 Ea Nb0 S kQ <R$IT=N#S#T$y V#8I#T#!h#8"I#z# &-f`g 86hH RR7 X7<?u#v#x#tz# {#}#~~##L$# #$#(#,t#0#4#8 =&$@#### #%#8I#V#  B  B %K RB@N $RO/ 5ARXL RR7] 8a    d  $$ e5 ;GB7jA##k#l*#m# /n# Gd  I%#BR##= .,42#3=# M,5 / 4 Q5.789T:05/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/crti.S/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/glibc-2.3.2/csuGNU AS 2.15(/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/crtn.S/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/glibc-2.3.2/csuGNU AS 2.15%% : ; I$ > $ >  : ;  : ; I8 I!I/  I : ;I  : ; : ; I  : ; ( ' II : ; &I'  < !I4: ; I? 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/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/config.habi-note.S/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/abi-tag.hinit.c/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/crti.S/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/defs.hinitfini.ccall_gmon_startcrtstuff.c__CTOR_LIST____DTOR_LIST____JCR_LIST__p.0completed.1__do_global_dtors_auxframe_dummy__CTOR_END____DTOR_END____FRAME_END____JCR_END____do_global_ctors_aux/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/crtn.Skmetis.cio.cmemory.cutil.ctiming.cstat.ckwayrefine.ckwayfm.cfortran.cmkmetis.cmkwayrefine.cmkwayfmh.ckwayvolfm.csubdomains.ccoarsen.cmatch.cccgraph.cpmetis.cpqueue.crefine.cdebug.cbucketsort.cgraph.cbalance.cmyqsort.csiqstiiqstkeyiqstkeyvaliqstmpmetis.cmcoarsen.cmmatch.cminitpart.cmbalance.cmrefine.cmutil.cmfm.cmrefine2.cminitpart2.cmbalance2.cmfm2.cfm.cinitpart.csrefine.csfm.c__idxmalloc__CheckNodeBnd__GrowBisectionNode__Project2WayNodePartition__FM_2WayNodeBalance__samin__Bnd2WayBalanceMETIS_PartGraphRecursive__MocRefine2Way2__AreAllBelow__FM_2WayNodeRefine_OneSided__idxwspacemalloc__snorm2__ComputePartitionInfo__MCMatch_SHEMvsprintf@@GLIBC_2.0__MCMatch_RM__PQueueInit__AllocateKWayPartitionMemoryfeof@@GLIBC_2.0__Match_HEM__SelectQueue__ismalloc__FM_2WayEdgeRefinesrand48@@GLIBC_2.0__Compute2WayHLoadImbalanceVec__MCHMlevelEdgeBisection__EliminateSubDomainEdges_DYNAMIC__Greedy_KWayVolBalance__CheckNodePartitionParams__MCMlevelEdgeBisection__SelectQueueOneWay2__idxaddSelectQueueOneWay__idxsum__log2__MocGrowBisectionMETIS_mCPartGraphKway__IsConnected__SelectQueue3__CreateGraph_fp_hwReadMesh__PQueueFreePQueueGetKey__Refine2WayNode__InitGraphfprintf@@GLIBC_2.0__errexit__AllocateWorkSpace__CheckBnd2fflush@@GLIBC_2.0__MocRefineKWayHorizontal__MocInit2WayPartition2__fini_array_endclock@@GLIBC_2.0__Compute2WayPartitionParams__FreeWorkSpace__ReAdjustMemory__CheckHeap__Change2FNumbering__MoveGroup__MocProjectKWayPartition__dso_handle__ComputeVolume__iset__libc_csu_fini__RandomBisection__MocInit2WayBalance__Allocate2WayNodePartitionMemoryputchar@@GLIBC_2.0__idxwspacefree__AreAllHVwgtsBelow__InitSeparator__ProjectKWayPartition__MCRandom_KWayEdgeRefineHorizontal__SetUpSplitGraph__Init2WayPartition__MCCoarsen2Way__MCGreedy_KWayEdgeBalanceHorizontal__MocGeneral2WayBalance2__AreAllHVwgtsAbove__KWayVolUpdate__ssetputs@@GLIBC_2.0_init__MocBalance2Way__idxsum_strdMETIS_mCHPartGraphRecursive__CreateCoarseGraph_NVW__idxamax__SplitGraphPartmalloc@@GLIBC_2.0__ChangeMesh2CNumbering__AreAllVwgtsBelowfscanf@@GLIBC_2.0__Match_SHEMWriteGraph__Change2FNumberingOrder__GKfreeFM_2WayNodeRefine2__MlevelRecursiveBisection__MocRandomBisection__Compute2WayHLoadImbalance__Match_RM_NVW__PQueueInsert__CreateCoarseGraph__PQueueSeeMax__Balance2Way__ComputeCutstdout@@GLIBC_2.0__IsBetter2wayBalanceabort@@GLIBC_2.0__isum__iintsort__IsHBalanceBetterTT__FreeGraph__ComputeKWayVolume__Change2CNumbering__MocComputeKWayPartitionParams__FM_2WayNodeRefineEqWgt__MoveGroupMConn__MocGrowBisection2__MlevelEdgeBisection__GrowBisection_startfgets@@GLIBC_2.0__MocRefine2Way__Random_KWayVolRefine__Change2FNumbering2__PQueueUpdate__sdotstrlen@@GLIBC_2.0__Coarsen2Way__InitTimers__PQueueResetfwspacefree__MocIsHBalanced__ComputePartitionBalanceMETIS_WPartGraphKway__ComputeHKWayLoadImbalance__strtol_internal@@GLIBC_2.0__Allocate2WayPartitionMemory__idxsmalloc__PQueueUpdateUp__ComputeKWayBalanceBoundary__Random_KWayEdgeRefineMConn__ssum_strdMETIS_mCPartGraphRecursiveInternal__idxamax_strd__MocGrowBisectionNew2__ChangeMesh2FNumbering__AreAnyVwgtsBelow__fini_array_start__SetUpCoarseGraphfputc@@GLIBC_2.0__libc_csu_init__bss_start__PrintTimers__Greedy_KWayEdgeRefinemain__WspaceAvail__SetUpGraph__Greedy_KWayEdgeBalanceMConn__ssum__MCMlevelRecursiveBisection__idxset__RandomPermute__libc_start_main@@GLIBC_2.0__ComputeLoadImbalance__ComputeKWayPartitionParams__Compute2WayNodePartitionParams__init_array_end__AreAllVwgtsAbove__MocFM_2WayEdgeRefine__FM_2WayNodeRefine__MocInit2WayPartition__MCMatch_SHEBM__MCHMlevelRecursiveBisection__MCMlevelKWayPartitioningrealloc@@GLIBC_2.0__IsSeparable__VolSetUpGraph__iamaxdata_start__Random_KWayVolRefineMConnprintf@@GLIBC_2.0__AreAllVwgtsBelowFast__MocAllocate2WayPartitionMemory_fini__ikeyvalsortsqrt@@GLIBC_2.0__BetterVBalance__iidxsortfclose@@GLIBC_2.1__General2WayBalance__ComputeSubDomainGraphWritePartitionEliminateVolComponentsCheckGraph__CheckRInfo__ispow2srand@@GLIBC_2.0__Refine2Way__ComputeElementBalance__MlevelKWayPartitioning__ComputeVolSubDomainGraph__ikeysort__CheckBndMETIS_mCPartGraphRecursive__MCMatch_HEM__EliminateComponents__saxpy__PQueueGetMax__Match_RM__CreateCoarseGraphNoMaskexit@@GLIBC_2.0METIS_WPartGraphRecursive__ChangeMesh2FNumbering2__EliminateVolSubDomainEdges__Greedy_KWayEdgeBalancesscanf@@GLIBC_2.0_edata__MocCompute2WayPartitionParams__i686.get_pc_thunk.bx_GLOBAL_OFFSET_TABLE_free@@GLIBC_2.0_end__BetterBalance__SelectQueue2WriteMeshPartition__SetUpGraph2__CheckVolKWayPartitionParams__MCMatch_SBHEM__sscale__imalloc__IsHBalanceBetterFT__Greedy_KWayVolBalanceMConn__MocInit2WayBalance2fopen@@GLIBC_2.1__init_array_start__Project2WayPartition__MocBalance2Way2_IO_stdin_used__GKmalloc__samax__seconds__samax2__MocFM_2WayEdgeRefine2__fwspacemalloc__InitRandomsprintf@@GLIBC_2.0drand48@@GLIBC_2.0__ComputeKWayBoundaryMETIS_PartGraphKway__data_start__charsum__PQueueDelete__SetUpGraphKway__MocProject2WayPartition_Jv_RegisterClassesReadGraphWriteMocGraph__IsBalanced__MocAllocateKWayPartitionMemoryrand@@GLIBC_2.0__FindComponents__Random_KWayEdgeRefine__PrintSubDomainGraph__RefineKWay__ComputeMaxNodeGain__idxaminComputePartitionInfoBipartiteMETIS_mCHPartGraphRecursiveInternalPQueueGetSize__RandomizeGraph__IsConnected2__MocGeneral2WayBalance__BucketSortKeysInc__IsConnectedSubdomain__gmon_start__strcpy@@GLIBC_2.0__MocComputeKWayBalanceBoundary__fmallocWritePermutationp7_submission/resources/pmetis0100775000076400007640000045132510227121347017000 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Nothing to do.%d %d %d %dReadGraph: xadjReadGraph: adjncyReadGraph: adjwgtReadGraph: vwgtFailed to open file %s %s.part.%dw%s.epart.%d%s.npart.%d%s.ipermMissing edge: (%d %d)! ReadMesh: elmntsmoc.graph.%d.%d%d %d 10 1 %d%d ------------------------------------------------------------------------------*** I detected an error in your input file *** In the first line of the file, you specified that the graph contained %d edges. However, I only found %d edges in the file. Please specify the correct number of edges in the first line of the file. *> I detected that you specified twice the number of edges that you have in the file. Remember that the number of edges specified in the first line counts each edge between vertices v and u only once. Buffer for fgets not big enough! The matrix is too big: %d [%d %d] You specified ncon=%d, but the fmt parameter does not specify vertex weights Make sure that the fmt parameter is set to either 10 or 11.Cannot read this type of file format!Problems in opening the partition file: %sProblems in opening the permutation file: %sA total of %d errors exist in the input file. Correct them, and run again! Edges (%d %d) and (%d %d) do not have the same weight! %d %d Vertex %d contains a self-loop (i.e., diagonal entry in the matrix)! Unknown mesh-element type: %d KAllocateWorkSpace: edegreesAllocateWorkSpace: maxcoreAllocateWorkSpace: vedegreesAllocateWorkSpace: pmatCreateCoarseGraph: graphKMETIS: tpwgtsPWMETIS: mytpwgtsSetUpSplitGraph: gdataSetUpSplitGraph: nvwgt?? ***Cannot bisect a graph with 0 vertices! ***You are trying to partition a graph into too many parts!SetUpSplitGraph: sgraph->labelUnknown refinement type: %d Allocate2WayPartitionMemory: rdataError! %s***Memory allocation failed for %s. Requested size: %d bytes Timing Information ------------------------------------------------- Matching: %7.3f Contract: %7.3f Initial Partition: %7.3f Construct Separator: %7.3f Refinement: %7.3f Projection: %7.3f ******************************************************************** Multilevel: %7.3f Coarsening: %7.3f Uncoarsening: %7.3f Splitting: %7.3f AUX1: %7.3f AUX2: %7.3f AUX3: %7.3f$tISetUpGraph: gdataSetUpGraph: nvwgtSetUpGraph: labelSetUpGraph2: graph->nvwgtSetUpGraph: vwgtIsConnected: touchedIsConnected: queueIsConnected: cptr[%5d %5d] %d connected components: [%5d] The graph has %d connected components in partition %d: The graph is not connected. It has %d disconnected vertices! ComputePartitionInfo: kpwgts%d-way Cut: %5d, Vol: %5d, Balance: (%5.3f out of %5.3f)ComputePartitionInfo: padjncyComputePartitionInfo: padjwgt Balance: %5.3f out of %5.3f ComputeElementBalance: kpwgtsMin/Max/Avg/Bal # of adjacent subdomains: %5d %5d %5.2f %7.3f Min/Max/Avg/Bal # of adjacent subdomain cuts: %5d %5d %5d %7.3f Min/Max/Avg/Bal/Frac # of interface nodes: %5d %5d %5d %7.3f %7.3f Min/Max/Avg/Bal # of adjacent subdomains: %5d %5d %5d %7.3f Minimum cut: %6d, PWGTS: [%6d %6d], NBND: %6d Moved %6d from %d. [%3d %3d] %5d [%4d %4d] Partitions: [%6d %6d] T[%6d %6d], Nv-Nb[%6d %6d]. ICut: %6d [B] MCHMlevelRecursiveBisection)\(?G?%6d %7d %10d [%d] [%6.4f %5.3fUnknown CType: %d ?%,=Wb|ffffff?{GzUnknown norm: %d Unknown initial partition type: %d Mincut: %6d, NBND: %6d, NPwgts: Moved %6d from %d(%d). [%5d] %5d, NPwgts: ] T[%.3f %.3f], Nv-Nb[%5d, %5d]. ICut: %6d, LB: %.3f [B] Initial Cut: %d [%d] BisectGraph: bestwhereBisectGraph: perm(%.3f, %.3f) What you thought was wrong! Pulled from the interior!Parts: [ Mincut: %6d at %5d, NBND: %6d, NPwgts: [Moved %6d from %d(%d). Gain: %5d, Cut: %5d, NPwgts: ], LB: %.3f , %.3f LB: %.3f {Gz??pABnpwgts] T[%.3f %.3f], Nv-Nb[%5d, %5d]. ICut: %6d, LB: %.3f h㈵>ACInitial Cut: %d ?] T[%.3f %.3f], Nv-Nb[%5d, %5d]. ICut: %6d, LB: ], LB: %.3f *[B]Random_KWayVolRefine: updindRandom_KWayVolRefine: markerRandom_KWayVolRefine: phtableComputeVolume: marker[%d %d %d %d] EliminateSubDomainEdges: candSomething wrong [%6d %6d], Balance: %5.3f, Nb: %6d. Nmoves: %5d, Cut: %6d, Vol: %6d Moving %6d from %3d to %3d. Gain: [%4d %4d]. Cut: %6d, Vol: %6d VolPart: [%5d %5d]-[%5d %5d], Balance: %3.2f, Nv-Nb[%5d %5d]. Cut: %5d, Vol: %5d You just increased the maxndoms: %d %d VolPart: [%5d %5d]-[%5d %5d], Balance: %3.2f, Nv-Nb[%5d %5d]. Cut: %5d, Vol: %5d [B] CheckVolKWayPartitionParams: tmpdegrees?333333?%6d %7d [%d] [%d %d] Minimum cut: %6d at %5d, PWGTS: [%6d %6d], NBND: %6d Partitions: [%6d %6d] T[%6d %6d], Nv-Nb[%6d %6d]. ICut: %6d GrowBisectionNode: graph->rdataInitial Sep: %d BisectGraph: touchedBisectGraph: queueSetUpCoarseGraph: gdataSetUpCoarseGraph: nvwgtPQueueInit: queue->nodesPQueueInit: queue->bucketsSomething wrong with part-weights: %d %d %d %d %d %d Something wrong with edegrees: %d %d %d %d %d BucketSortKeysInc: countsX?$? Minimum sep: %6d at %5d, PWGTS: [%6d %6d], NBND: %6d Moved %6d to %3d, Gain: %5d [%5d] [%4d %4d] [%5d %5d %5d] Partitions: [%6d %6d] Nv-Nb[%6d %6d]. ISep: %6d Moved %6d to %3d, Gain: %5d [%5d] [%5d %5d %5d] [%3d %2d] Partitions-N1: [%6d %6d] Nv-Nb[%6d %6d]. ISep: %6d Balanced sep: %6d at %4d, PWGTS: [%6d %6d], NBND: %6d Moved %6d to %3d, Gain: %3d, [%5d %5d %5d] Partitions: [%6d %6d] Nv-Nb[%6d %6d]. ISep: %6d [B] Something went wrong!83  cH< % @ooob\.>N^n~·އ.>N^n~ΈވGCC: (GNU) 3.3.5 (Debian 1:3.3.5-3)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-3)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-3)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-5)GCC: (GNU) 3.3.5 (Debian 1:3.3.5-3)",@ c "$' c!_IO_stdin_used../sysdeps/i386/elf/start.S/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/glibc-2.3.2/csuGNU AS 2.15q.`C0'"B3#T$0N%q"(^)B*C+T ,int-0\23E;U<400q00at+#'W~abq\0 a0|aaaYaq5qJh  qP0 Ea Nb0 S kQ <R$IT=N#S#T$y V#8I#T#!h#8"I#z# &-f`g 86hH RR7 X7<?u#v#x#tz# {#}#~~##L$# #$#(#,t#0#4#8 =&$@#### #%#8I#V#  B  B %K RB@N $RO/ 5ARXL RR7] 8a    d  $$ e5 ;GB7jA##k#l*#m# /n# Gd  I%#BR##= .,42#3=# M,5 / 4 Q5.789T:0d5/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/crti.S/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/glibc-2.3.2/csuGNU AS 2.15(/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/crtn.S/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/glibc-2.3.2/csuGNU AS 2.15%% : ; I$ > $ >  : ;  : ; I8 I!I/  I : ;I  : ; : ; I  : ; ( ' II : ; &I'  < !I4: ; I?  %%S/ ../sysdeps/i386/elfstart.S.01:"VWYX  /usr/lib/gcc-lib/i486-linux/3.3.5/include../sysdeps/generic/bits../wcsmbs../sysdeps/gnu../iconvinit.cstddef.htypes.hwchar.h_G_config.hgconv.hz /disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csucrti.Sc2,Wd",: ,Wdd,,-:z /disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csucrtn.Sc: _G_int32_t__time_t__GCONV_INCOMPLETE_INPUT__GCONV_OK__state__gconv_init_fct_G_iconv_t__rlim64_t__GCONV_ILLEGAL_DESCRIPTOR__gconv_infoshort unsigned intunsigned char__useconds_t__counter__fct__val__value__nsteps_G_int16_t__max_needed_from__gconv_btowc_fct__off_t__ssize_t__statepinit.c__fsfilcnt_t__steps__fsfilcnt64_t__blkcnt_t__gconv_loaded_object_G_fpos64_t__gconv_t__trans_end_fct__u_int__GCONV_ILLEGAL_INPUT__blksize_t__to_name__uint64_t__id_t__GCONV_EMPTY_INPUT__cd__ino_t__GCONV_NOCONV__invocation_counter__pid_t__u_short__count__quad_t__u_long__fsid_t__GCONV_FULL_OUTPUT__max_needed_to__timer_t__stateful__uint32_t__key_t__u_char__gconv_step__shlib_handle__min_needed_toshort int__dev_tlong long int__gconv_trans_data__outbuflong long unsigned int__uid_t__wchb__uint16_twint_t__u_quad_t/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/glibc-2.3.2/csu__gconv_trans_end_fct__flags__outbufend__combined__gconv_trans_init_fct__init_fct__modname__trans_context_fct__trans_fctGNU C 3.3.5 (Debian 1:3.3.5-3)__rlim_t__wch__intptr_t__suseconds_t__ino64_twchar_t__GCONV_IS_LAST__blkcnt64_t__fsblkcnt64_t__mode_t__qaddr_t__pos__gconv_end_fct_IO_stdin_used__internal_use__GCONV_NODB__clock_t__gconv_step_data__gconv_trans_query_fct__socklen_t__int64_t__GCONV_NOMEM__off64_t__btowc_fct_G_fpos_t__int8_t__daddr_t__fsblkcnt_t_G_uint32_t__nlink_t__swblk_t__GCONV_INTERNAL_ERROR__mbstate_t__gid_t__clockid_t__int32_t__gconv_trans_context_fct__next__GCONV_IGNORE_ERRORS__end_fct__trans__uint8_t__gconv_fct__from_name__min_needed_from__gconv_trans_fct__data__caddr_t_G_uint16_t__loff_t__int16_t.symtab.strtab.shstrtab.interp.note.ABI-tag.hash.dynsym.dynstr.gnu.version.gnu.version_r.rel.dyn.rel.plt.init.text.fini.rodata.data.eh_frame.dynamic.ctors.dtors.jcr.got.bss.comment.debug_aranges.debug_pubnames.debug_info.debug_abbrev.debug_line.debug_str#(( 1HH7  ?<<%GobbDToPc l  up{cdK LL XX\\,,44<<@@ē x0 %U  c80< X&  x x=](H<b    c dLX\,4<@ē uucu ,4 <Tȓ)@ ? 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/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/config.habi-note.S/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/abi-tag.hinit.c/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/crti.S/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/defs.hinitfini.ccall_gmon_startcrtstuff.c__CTOR_LIST____DTOR_LIST____JCR_LIST__p.0completed.1__do_global_dtors_auxframe_dummy__CTOR_END____DTOR_END____FRAME_END____JCR_END____do_global_ctors_aux/disk/hdc2/glibc/debian-build/glibc_2.3.2.ds1-20.test2/glibc-2.3.2.ds1/build-tree/i386-libc/csu/crtn.Spmetis.cio.cmemory.crefine.cutil.ctiming.cgraph.cstat.cbalance.cfortran.cmpmetis.cmcoarsen.cmmatch.cminitpart.cmbalance.cmrefine.cmutil.cmfm.cmrefine2.cminitpart2.cmbalance2.cmfm2.ckwayvolfm.ccoarsen.cfm.cinitpart.cmatch.cccgraph.cpqueue.cdebug.cbucketsort.csrefine.csfm.cmyqsort.csiqstiiqstkeyiqstkeyvaliqst__idxmalloc__CheckNodeBnd__GrowBisectionNode__Project2WayNodePartition__FM_2WayNodeBalance__samin__Bnd2WayBalanceMETIS_PartGraphRecursive__MocRefine2Way2__AreAllBelow__FM_2WayNodeRefine_OneSided__idxwspacemalloc__snorm2__ComputePartitionInfo__MCMatch_SHEMvsprintf@@GLIBC_2.0__MCMatch_RM__PQueueInitfeof@@GLIBC_2.0__Match_HEM__SelectQueue__ismalloc__FM_2WayEdgeRefinesrand48@@GLIBC_2.0__Compute2WayHLoadImbalanceVec__MCHMlevelEdgeBisection_DYNAMIC__Greedy_KWayVolBalance__CheckNodePartitionParams__MCMlevelEdgeBisection__SelectQueueOneWay2__idxaddSelectQueueOneWay__idxsum__log2__MocGrowBisection__IsConnected__SelectQueue3__CreateGraph_fp_hwReadMesh__PQueueFreePQueueGetKey__Refine2WayNode__InitGraphfprintf@@GLIBC_2.0__errexit__AllocateWorkSpace__CheckBnd2fflush@@GLIBC_2.0__MocInit2WayPartition2__fini_array_endclock@@GLIBC_2.0__Compute2WayPartitionParams__FreeWorkSpace__ReAdjustMemory__CheckHeap__Change2FNumbering__dso_handle__ComputeVolume__iset__libc_csu_fini__RandomBisection__MocInit2WayBalance__Allocate2WayNodePartitionMemoryputchar@@GLIBC_2.0__idxwspacefree__InitSeparator__SetUpSplitGraph__Init2WayPartition__MCCoarsen2Way__MocGeneral2WayBalance2__KWayVolUpdate__ssetputs@@GLIBC_2.0_init__MocBalance2Way__idxsum_strdMETIS_mCHPartGraphRecursive__CreateCoarseGraph_NVW__idxamax__SplitGraphPartmalloc@@GLIBC_2.0__ChangeMesh2CNumbering__AreAllVwgtsBelowfscanf@@GLIBC_2.0__Match_SHEMWriteGraph__Change2FNumberingOrder__GKfreeFM_2WayNodeRefine2__MlevelRecursiveBisection__MocRandomBisection__Compute2WayHLoadImbalance__Match_RM_NVW__PQueueInsert__CreateCoarseGraph__PQueueSeeMax__Balance2Way__ComputeCutstdout@@GLIBC_2.0__IsBetter2wayBalanceabort@@GLIBC_2.0__isum__iintsort__FreeGraph__ComputeKWayVolume__Change2CNumbering__FM_2WayNodeRefineEqWgt__MocGrowBisection2__MlevelEdgeBisection__GrowBisection_startfgets@@GLIBC_2.0__MocRefine2Way__Random_KWayVolRefine__Change2FNumbering2__PQueueUpdate__sdotstrlen@@GLIBC_2.0__Coarsen2Way__InitTimers__PQueueResetfwspacefree__ComputePartitionBalance__strtol_internal@@GLIBC_2.0__Allocate2WayPartitionMemory__idxsmalloc__PQueueUpdateUp__ssum_strdMETIS_mCPartGraphRecursiveInternal__idxamax_strd__MocGrowBisectionNew2__ChangeMesh2FNumbering__AreAnyVwgtsBelow__fini_array_start__SetUpCoarseGraphfputc@@GLIBC_2.0__libc_csu_init__bss_start__PrintTimersmain__WspaceAvail__SetUpGraph__ssum__MCMlevelRecursiveBisection__idxset__RandomPermute__libc_start_main@@GLIBC_2.0__ComputeLoadImbalance__Compute2WayNodePartitionParams__init_array_end__AreAllVwgtsAbove__MocFM_2WayEdgeRefine__FM_2WayNodeRefine__MocInit2WayPartition__MCMatch_SHEBM__MCHMlevelRecursiveBisectionrealloc@@GLIBC_2.0__IsSeparable__VolSetUpGraph__iamaxdata_start__Random_KWayVolRefineMConnprintf@@GLIBC_2.0__AreAllVwgtsBelowFast__MocAllocate2WayPartitionMemory_fini__ikeyvalsortsqrt@@GLIBC_2.0__BetterVBalance__iidxsortfclose@@GLIBC_2.1__General2WayBalanceWritePartitionEliminateVolComponentsCheckGraph__CheckRInfo__ispow2srand@@GLIBC_2.0__Refine2Way__ComputeElementBalance__ComputeVolSubDomainGraph__ikeysort__CheckBndMETIS_mCPartGraphRecursive__MCMatch_HEM__saxpy__PQueueGetMax__Match_RM__CreateCoarseGraphNoMaskexit@@GLIBC_2.0METIS_WPartGraphRecursive__ChangeMesh2FNumbering2__EliminateVolSubDomainEdgessscanf@@GLIBC_2.0_edata__MocCompute2WayPartitionParams__i686.get_pc_thunk.bx_GLOBAL_OFFSET_TABLE_free@@GLIBC_2.0_end__BetterBalance__SelectQueue2WriteMeshPartition__SetUpGraph2__CheckVolKWayPartitionParams__MCMatch_SBHEM__sscale__imalloc__Greedy_KWayVolBalanceMConn__MocInit2WayBalance2fopen@@GLIBC_2.1__init_array_start__Project2WayPartition__MocBalance2Way2_IO_stdin_used__GKmalloc__samax__seconds__samax2__MocFM_2WayEdgeRefine2__fwspacemalloc__InitRandomsprintf@@GLIBC_2.0drand48@@GLIBC_2.0__data_start__charsum__PQueueDelete__SetUpGraphKway__MocProject2WayPartition_Jv_RegisterClassesReadGraphWriteMocGraphrand@@GLIBC_2.0__FindComponents__ComputeMaxNodeGain__idxaminComputePartitionInfoBipartiteMETIS_mCHPartGraphRecursiveInternalPQueueGetSize__RandomizeGraph__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5ustar sandeshsandeshp7_submission/bin/utils/0040775000076400007640000000000010227121567015444 5ustar sandeshsandeshp7_submission/bin/utils/SystemProperties.class0100664000076400007640000000302610227121567022032 0ustar sandeshsandesh.Sutils/SystemPropertiesjava/lang/ObjectpropsLjava/util/Properties;()VCodejava/util/Properties    java/io/FileInputStream!./resources/systemproperties.prop(Ljava/lang/String;)V  java/io/FileNotFoundExceptionprintStackTrace  java/lang/Systemexit(I)V  !load(Ljava/io/InputStream;)V #$ %java/io/IOException'LineNumberTableLocalVariableTableinstreamLjava/io/InputStream;eLjava/io/FileNotFoundException;Ljava/io/IOException;  thisLutils/SystemProperties; getProperty&(Ljava/lang/String;)Ljava/lang/String; 34 5nameLjava/lang/String;main([Ljava/lang/String;)VoutLjava/io/PrintStream; ;< =BASEDIR? 5java/io/PrintStreamBprintln D CEargs[Ljava/lang/String; addProperty'(Ljava/lang/Object;Ljava/lang/Object;)Vput8(Ljava/lang/Object;Ljava/lang/Object;)Ljava/lang/Object; KL 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YKYK L+"*&L ",,()&   "!,"-*  "+,-.--/  /*0)* 12 34 2*6)(* 78 9: : >@AF) , -*  GH IJ B *+NW) 0 1* 7O POQRp7_submission/bin/utils/SystemException.class0100664000076400007640000000147710227121567021644 0ustar sandeshsandesh.!utils/SystemExceptionjava/lang/Exception()VCode  LineNumberTableLocalVariableTablethisLutils/SystemException;(Ljava/lang/String;)V  arg0Ljava/lang/String;(Ljava/lang/Throwable;)V  Ljava/lang/Throwable;*(Ljava/lang/String;Ljava/lang/Throwable;)V  arg1main([Ljava/lang/String;)Vargs[Ljava/lang/String; SourceFileSystemException.java!3*    >*+   >*+  !  I*+, ()   + ,  p7_submission/bin/utils/SystemConstants.class0100664000076400007640000000103310227121567021646 0ustar sandeshsandesh.!utils/SystemConstantsjava/lang/Object FIELDNAMELjava/lang/String; ConstantValue fieldnameDEFAULTGRAPHFILE graphfile MAXINTmaxint INDEXDIRPATHindexdir TEMPFOLDER tempfolder()VCode  LineNumberTableLocalVariableTablethisLutils/SystemConstants; SourceFileSystemConstants.java1    /*  p7_submission/bin/utils/ProcessInvoker.class0100664000076400007640000000313410227121567021445 0ustar sandeshsandesh.butils/ProcessInvokerjava/lang/Object()VCode  LineNumberTableLocalVariableTablethisLutils/ProcessInvoker;invoke'(Ljava/lang/String;)Ljava/lang/Process; Exceptionsutils/SystemExceptionjava/lang/Runtime getRuntime()Ljava/lang/Runtime;  exec  java/lang/SystemoutLjava/io/PrintStream;   java/lang/Exception" getMessage()Ljava/lang/String; $% #&java/io/PrintStream(println(Ljava/lang/String;)V *+ ),Wrong Command for execution. + 0commandLjava/lang/String;envLjava/lang/Runtime;processLjava/lang/Process;eLjava/lang/Exception;main([Ljava/lang/String;)Vjava/lang/StringBuffer<SASApplication>utils/SystemProperties@ getProperty&(Ljava/lang/String;)Ljava/lang/String; BC AD =0tests/test3.sasGappend,(Ljava/lang/String;)Ljava/lang/StringBuffer; IJ =KtoString M% =Nutils/DebuggerPwriteln(ILjava/lang/String;)V RS QT  VprintStackTrace X Yargs[Ljava/lang/String; sascommandLjava/lang/StringBuffer;Lutils/SystemException; SourceFileProcessInvoker.java!/*    $L+*MN!-'-Y/1, #  " 4$23 45 67"6789 :;-=Y?EFL+HLW+OU+OWWM,Z''  !"$'%(&,( -[\ ]^(8_`ap7_submission/bin/utils/Debugger.class0100664000076400007640000000332510227121567020217 0ustar sandeshsandesh.`utils/Debuggerjava/lang/ObjectoutLjava/io/PrintWriter;()VCodejava/io/PrintWriter java/lang/System Ljava/io/PrintStream;  (Ljava/io/OutputStream;)V    java/lang/StringBufferBASEDIRutils/SystemProperties getProperty&(Ljava/lang/String;)Ljava/lang/String;  (Ljava/lang/String;)V ! " LogFileName$append,(Ljava/lang/String;)Ljava/lang/StringBuffer; &' (toString()Ljava/lang/String; *+ ,java/io/PrintStream.println 0! /1java/io/FileWriter3 4"(Ljava/io/Writer;)V 6 7java/io/IOException9 getMessage ;+ :<LineNumberTableLocalVariableTable logFileNameLjava/lang/StringBuffer;eLjava/io/IOException;  DthisLutils/Debugger;writeprint I! Jflush L MsLjava/lang/String;(ILjava/lang/String;)V DebugLevelIwriteln 1main([Ljava/lang/String;)VKaushalX H! Zargs[Ljava/lang/String; SourceFile Debugger.java!  R YY #K*% )W*-2 Y4Y*-58L+=2.FF:>" $.FGQ?8@AG BC /*E>? FG H! @*KN>$% &? OP HQ J+KN>)* ,?RSOP T! @*UN>/0 1? OP TQ J+UN>45 7?RSOP VW 4Y[> :;? \]^_p7_submission/bin/indexerWrapper/0040775000076400007640000000000010227121567017303 5ustar sandeshsandeshp7_submission/bin/indexerWrapper/LuceneWrapper.class0100664000076400007640000001611310227121567023105 0ustar sandeshsandesh.#indexerWrapper/LuceneWrapperjava/lang/ObjectindexerWrapper/IndexerWrapperreader%Lorg/apache/lucene/index/IndexReader; numberOfDocsIwrapperLindexerWrapper/IndexerWrapper;count()VCode   LineNumberTableLocalVariableTablegetIndexWrapper3(Ljava/lang/String;)LindexerWrapper/IndexerWrapper;(Ljava/lang/String;)V  java/lang/SystemoutLjava/io/PrintStream; !" #utils/SystemException% getMessage()Ljava/lang/String; '( &)java/io/PrintStream+println - ,. indexDirPathLjava/lang/String;eLutils/SystemException; Exceptions  5  7#org/apache/lucene/index/IndexReader9open9(Ljava/lang/String;)Lorg/apache/lucene/index/IndexReader; ;< :=#Unable to locate the inverted index? &java/io/IOExceptionBthisLindexerWrapper/LuceneWrapper;Ljava/io/IOException; getDocIds()Ljava/util/Vector;maxDoc()I IJ :Kjava/util/VectorM N5java/lang/IntegerP(I)V R QSadd(Ljava/lang/Object;)Z UV NWmaxdocIdvecLjava/util/Vector;igetTermsterms$()Lorg/apache/lucene/index/TermEnum; ^_ :` org/apache/lucene/index/TermEnumbterm ()Lorg/apache/lucene/index/Term; de cforg/apache/lucene/index/Termhtext j( iknext()Z mn cotermEnum"Lorg/apache/lucene/index/TermEnum;Lorg/apache/lucene/index/Term; getPosting&(Ljava/lang/String;)Ljava/util/Vector; fieldnamevutils/SystemPropertiesx getProperty&(Ljava/lang/String;)Ljava/lang/String; z{ y|java/lang/String~ toLowerCase ( '(Ljava/lang/String;Ljava/lang/String;)V  itermDocsB(Lorg/apache/lucene/index/Term;)Lorg/apache/lucene/index/TermDocs; : org/apache/lucene/index/TermDocsdoc J otermStrdocs"Lorg/apache/lucene/index/TermDocs;getPostingArray(Ljava/lang/String;)[IdocCount(Ljava/lang/String;)I sizedocArr[I(I)[Ljava/lang/String;getTermFreqVector=(ILjava/lang/String;)Lorg/apache/lucene/index/TermFreqVector; :&org/apache/lucene/index/TermFreqVector J ()[Ljava/lang/String; ] docId(Lorg/apache/lucene/index/TermFreqVector;strgetTermTFIDFMap(I)Ljava/util/HashMap;java/util/HashMap 5getTermFrequencies()[I Unabble to read the index file java/lang/Mathlog(D)D getNumberOfDocs J java/lang/Double(D)V  put8(Ljava/lang/Object;Ljava/lang/Object;)Ljava/lang/Object;  returnMapLjava/util/HashMap;freqArrtermsArr[Ljava/lang/String;jfreqd_tTFIDFDgetTermFrequencyMapgetDocFrequencyMap'(Ljava/lang/String;)Ljava/util/HashMap; J termTextmapnumDocs J : getMaxDocIddocFreq!(Lorg/apache/lucene/index/Term;)I :getDocIdsArraygetDocFrequencyArray(Ljava/lang/String;)[[I[[I docFreqArrgetPath(I)Ljava/lang/String;document((I)Lorg/apache/lucene/document/Document; :path#org/apache/lucene/document/Documentget { main([Ljava/lang/String;)V J  -R , IndexWriter   ]  practised java/lang/StringBuffer  5append(I)Ljava/lang/StringBuffer;     toString (   java/lang/ExceptionprintStackTrace  argswraptempLjava/lang/Exception; getTermVector(I)Ljava/util/Vector; C)arr SourceFileLuceneWrapper.java! 9 ).3  ~*`Y*L$+*/&?@ACDE(F*01 234&z *6*8*+>8M&Y@A CK$ MNOR  DE 01 2FGH,*8L<NYOM>,QYTXW,XYZ["Z*]*,DE$Y Z[\ ]H4C.NYOL*8aM,,gN+-lXW,p+"deghij%h,m*.DE&Z[qr dstu4CJiYw}+MNYON*8,:#-QYTXW-"tuw#y(z+{>zH~4JDEJ19ds1Z[#'4CMiYw}+M*+>*8,: :6O* !&).1@JHMDEM1<ds6 !,&')$ ]4C&0Mw}N*8w}MN,, ,C'.*0DE0 .Z14& YMNw}:*8w}N:---:-:6j.66*26: &YA9  9 cc*`lk9 ,2Y ŶW-, ""CQ__CV "$19AGNQ_akpu{z DE  Z19AxDu N] QZ a 2F p; 4&#qYMNw}:*8w}N:-J-A-:-:6 .6,2QYTW-, ""C6  "$19AGNao\ qDEq i gZ196A.D+ N 4CRiYw}+M*8,NY:#QY-TQY-TW-#&FO4RDER1Ads8#/JG *8ݳ DEJ4 *8Ld  DE4C\iYw}+M*8,  DE1 ds{*8L< M> ,O,  "*DEY  \ 4CWiYw}+M*+>*8,::!2O2O& ,-.!/)0,1;2J0T4>WDEW1Fds@ !6).4CB*88DE  $xY*2L$+$++M+N+:+:6$ Y ./$-/L+rr:= >?@&A,B3C<DBEZDeFrGsHwKRx gE&L,F3?^<6?&\ s24&BM*MN&Y-ANYON,6-,2XW,-C* OQRSU#V'W-X6W@[>BDEB =  2F#Z[*\ !"p7_submission/bin/indexerWrapper/IndexerWrapper.class0100664000076400007640000000167510227121567023277 0ustar sandeshsandesh.&indexerWrapper/IndexerWrapperjava/lang/Object getDocIds()Ljava/util/Vector;getDocIdsArray()[IgetTerms Exceptionsjava/io/IOException  getPosting&(Ljava/lang/String;)Ljava/util/Vector;getPostingArray(Ljava/lang/String;)[I(I)[Ljava/lang/String;utils/SystemExceptiongetPath(I)Ljava/lang/String;getTermTFIDFMap(I)Ljava/util/HashMap;getTermFrequencyMapgetDocFrequencyMap'(Ljava/lang/String;)Ljava/util/HashMap;getDocFrequencyArray(Ljava/lang/String;)[[IgetNumberOfDocs()I getMaxDocIddocCount(Ljava/lang/String;)I getTermVector(I)Ljava/util/Vector; SourceFileIndexerWrapper.java                        !  "# $%p7_submission/bin/gamma/0040775000076400007640000000000010227121567015366 5ustar sandeshsandeshp7_submission/bin/gamma/GammaCode.class0100664000076400007640000001256010227121567020233 0ustar sandeshsandesh.gamma/GammaCodejava/lang/Objectlogindex[I()VCode   LineNumberTableLocalVariableTable  thisLgamma/GammaCode;encode(J)Ljava/lang/String;log(J)I  @java/lang/Mathpow(DD)D  !java/lang/String#(Ljava/lang/String;)V % $&java/lang/StringBuffer(valueOf&(Ljava/lang/Object;)Ljava/lang/String; *+ $, )&1/append,(Ljava/lang/String;)Ljava/lang/StringBuffer; 12 )3toString()Ljava/lang/String; 56 )709java/lang/Integer;toBinaryString(I)Ljava/lang/String; => <?length()I AB $CxJlIransLjava/lang/String;remi'(Ljava/lang/String;I)Ljava/lang/String;anumbinydecode(Ljava/lang/String;)J Exceptionsjava/lang/NumberFormatException\equals(Ljava/lang/Object;)Z ^_ $` toCharArray()[C bc $d([CII)V f $gjava/lang/Longi parseLong(Ljava/lang/String;I)J kl jmbits[C([I)[B  r subSequence(II)Ljava/lang/CharSequence; tu $vjava/lang/CharSequencexcharAt(I)C z{ y|intarr[BcodejcountseqLjava/lang/CharSequence;bBstart([B)[Ijava/util/Vector  $| substring(II)Ljava/lang/String; $parseInt(Ljava/lang/String;I)I <(I)V  <add _ size B get(I)Ljava/lang/Object; intValue B <bytearrfullcodeisnegZindex singlevalvectorLjava/util/Vector;len SourceFileGammaCode.java! w? YOYOYOYOYOYOYOYOY OY OY OY OY OYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOY OY!OY"OY#OY$OY%OY&OY'OY(OY)OY*OY+OY,OY-OY.OY/OY0OY1OY2OY3OY4OY5OY6OY7OY8OY9OY:OY;OY<OY=OY>OY?OY@OYAOYBOYCOYDOYEOYFOYGOYHOYIOYJOYKOYLOYMOYNOYOOYPOYQOYROYSOYTOYUOYVOYWOYXOYYOYZOY[OY\OY]OY^OY_OY`OYaOYbOYcOYdOYeOYfOYgOYhOYiOYjOYkOYlOYmOYnOYoOYpOYqOYrOYsOYtOYuOYvOYwOYxOYyOYzOY{OY|OY}OY~OYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYOYO   4.: >  /*    f ="g>$Y':$Y':6)Y-.048:)Y-.:48: : @:D6)Y:.48:)Y-.48: J &1!7"M!V#l%p&w(}*+*-/ HEFGHIH&JK1LK4"MHMH 1N J@M 45 OKPHQK  N6A R# T {A6 {A6 V {A6 .``6 6 :;= ?@A!C&D-G5I:J>NKO NPFIXFKJH YZ[] H*a *eL=> +0U*D +41+1U$Y+*Ddhn & S T VYZ[Z/\4] *HEK8op6GH4MH q  M66 )Y,-.*.s48M*,Dp6*6)Y,-.048Md,D6lL6M,`w:6 6 >!}1   `6  z6 + T+ bbcf g&f0j9k>lDmXlevkwsyyz}~y f ~sYJK3MH H9LHH=5 8H Y :6 =*36:66 ~6C6 =p)Y:.48:)Y0.48:z6>)Y:.48:d )Y0.48:)Y-.48:*A6 6Y: D6 o 6    1  O d6 )Y0.  `48:6  ((Ljava/util/HashMap;Ljava/lang/String;)VCode()V        #org/apache/lucene/index/IndexReaderopen9(Ljava/lang/String;)Lorg/apache/lucene/index/IndexReader;  !java/io/IOException#printStackTrace % $&java/lang/System(exit(I)V *+ ),LineNumberTableLocalVariableTablethisLgamma/CompressionStats;eLjava/io/IOException;getNewGamma_codedCount()I 6getOrigGamma_codedCount 9 getPlainCount < Statisticsterms$()Lorg/apache/lucene/index/TermEnum; ?@ A org/apache/lucene/index/TermEnumCterm ()Lorg/apache/lucene/index/Term; EF DGtermDocsB(Lorg/apache/lucene/index/Term;)Lorg/apache/lucene/index/TermDocs; IJ Kjava/util/VectorM Njava/lang/IntegerP org/apache/lucene/index/TermDocsRdoc T5 SU + QWadd(Ljava/lang/Object;)Z YZ N[next()Z ]^ S_errLjava/io/PrintStream; ab )cjava/lang/StringBuffereorg/apache/lucene/index/Termgtext()Ljava/lang/String; ij hkjava/lang/StringmvalueOf&(Ljava/lang/Object;)Ljava/lang/String; op nq(Ljava/lang/String;)V s ft....vappend,(Ljava/lang/String;)Ljava/lang/StringBuffer; xy fztoString |j f}java/io/PrintStreamprintln s size 5 NtoArray(([Ljava/lang/Object;)[Ljava/lang/Object; Njava/util/Arrayssort([Ljava/lang/Object;)V get(I)Ljava/lang/Object; NintValue 5 Qjava/util/HashMap&(Ljava/lang/Object;)Ljava/lang/Object; gamma/GammaCodeencode([I)[B D_7The inv-index size with gamma-encoding on orig ids is: (I)Ljava/lang/StringBuffer; x f KB6The inv-index size with gamma-encoding on new ids is: ,The inv-index size without any encoding is: gammacount_origgammacount_new plaincountte"Lorg/apache/lucene/index/TermEnum;tLorg/apache/lucene/index/Term;td"Lorg/apache/lucene/index/TermDocs;vLjava/util/Vector; orig_docids[I new_docidsdocIds1[Ljava/lang/Integer;iidLjava/lang/Integer;ks1s2tempgammaPostings_origids[BgammaPostings_newidsmain([Ljava/lang/String;)V Exceptionsjava/io/FileNotFoundExceptionout b ) f :   java/io/File texists ^ canRead ^ isFile ^ Cannot read file:  $tfile doesnt exist:  tjava/io/BufferedReaderjava/io/FileReader(Ljava/io/File;)V  (Ljava/io/Reader;)V  indexOf(I)I n substring(II)Ljava/lang/String; n(I)Ljava/lang/String; n Qtput8(Ljava/lang/Object;Ljava/lang/Object;)Ljava/lang/Object; readLine j trim j n   >  85  45  ;5 args[Ljava/lang/String;oldToNewIdFileNamemapindexDirfLjava/io/File;brLjava/io/BufferedReader;oldIdnewIdlinepathsc SourceFileCompressionStats.java! 3*****,*+*," N-'-))$.. * !+,.)/*0.123/*30133*2345/*7.;/ 0185/*:.B/ 01;5/*=.K/ 01>n<=>*B:4H:*L:NYO:QYVX\W`dfYlruw{~ : : Q:  W 6 0 Q:   O  * QO  6 6 6 6 .6  . dO6   .6    . dO6  ::::  :  `< `=h`>*=*:*7dfYul{~dfYul{~dfYul{~ :'$.0OPQTUVW$[-\0]D\N`kbtc}efgjklmjqrstvw x q{|}!~(/5;CUKPUZy/01   *$-t} :  D A > ) ( / 23 $0 DлfY*Ӷ{*2{~*2LYM*2NY+:ڙ1ݙ6$YfYu+{~㿧YfYu+{~濻YY:9-:-`:,QYQYWY:-: Y, :   лfYu  ~лfYu ~лfYu ~.Z $,0:BUp)C/z D$ ,0: '6i` T1  p7_submission/bin/demo/0040775000076400007640000000000010227121567015230 5ustar sandeshsandeshp7_submission/bin/demo/Test.class0100664000076400007640000000652510227121567017203 0ustar sandeshsandesh. demo/Testjava/lang/Object()VCode  LineNumberTableLocalVariableTablethis Ldemo/Test;main([Ljava/lang/String;)Vindexdirutils/SystemProperties getProperty&(Ljava/lang/String;)Ljava/lang/String;  java/lang/Stringtrim()Ljava/lang/String;  java/lang/SystemoutLjava/io/PrintStream; ! "java/io/PrintStream$println(Ljava/lang/String;)V &' %(indexerWrapper/LuceneWrapper*getIndexWrapper3(Ljava/lang/String;)LindexerWrapper/IndexerWrapper; ,- +.could not locate the index 0exit(I)V 23 4OrderIndex/OrderIndex6"(LindexerWrapper/IndexerWrapper;)V 8 79utils/SystemException;printStackTrace = <>indexerWrapper/IndexerWrapper@ getDocIds()Ljava/util/Vector; BC ADOrderIndex/ShortIndexF(Ljava/util/Vector;)V H GI G getMaxDocId()I LM ANcurrentTimeMillis()J PQ R orderIndexJ(LOrderIndex/ShortIndex;IILOrderIndex/ShortIndex;LOrderIndex/ShortIndex;)V TU 7Vjava/lang/StringBufferX Reordering time Z ' Y\append(J)Ljava/lang/StringBuffer; ^_ Y`toString b Ycutils/Debuggerewriteln g' fhjava/io/IOExceptionj k>getOrderedDocIds()Ljava/util/HashMap; mn 7ojava/util/HashMapqkeySet()Ljava/util/Set; st ru java/util/Setwiterator()Ljava/util/Iterator; yz x{java/util/Iterator}next()Ljava/lang/Object;  ~ cvalueOf&(Ljava/lang/Object;)Ljava/lang/String; -,(Ljava/lang/String;)Ljava/lang/StringBuffer; ^ Yget&(Ljava/lang/Object;)Ljava/lang/Object; rhasNext()Z ~gamma/CompressionStats((Ljava/util/HashMap;Ljava/lang/String;)V   Statistics  7The inv-index size with gamma-encoding on orig ids is: getOrigGamma_codedCount M (I)Ljava/lang/StringBuffer; ^ Y6The inv-index size with gamma-encoding on new ids is: getNewGamma_codedCount M ,The inv-index size without any encoding is:  getPlainCount M args[Ljava/lang/String;pathLjava/lang/String;wrapperLindexerWrapper/IndexerWrapper; indexorderLOrderIndex/OrderIndex;eLutils/SystemException;docidsLjava/util/Vector;ILOrderIndex/ShortIndex;IRILlh starttimeJLjava/io/IOException;mapLjava/util/HashMap;itLjava/util/Iterator;obLjava/lang/Object;scLgamma/CompressionStats; SourceFile Test.java!/*     bL#+)+/M,#1)5N7Y,:N :?-&,E:GYJ:GYK:GYK:66 ,O6 S7 - WYY[]S eadi:  l :  ?-p:  v|: 6 : #YY ]  d) ƻY +:  #YY] d)#YY] d)#YY] d)'33<iki< %! #$%&!'%)'+3,5-:/>1F2Q3Z4c5f6i8q9v:;<=>?BCDEFDIJL-MGNaP b YM';5FQZcfi v)   * S p7_submission/bin/demo/FileDocument.class0100664000076400007640000000266110227121567020637 0ustar sandeshsandesh.Sdemo/FileDocumentjava/lang/ObjectDocument5(Ljava/io/File;)Lorg/apache/lucene/document/Document; Exceptionsjava/io/FileNotFoundExceptionCode#org/apache/lucene/document/Document ()V  path java/io/FilegetPath()Ljava/lang/String;   org/apache/lucene/document/Field UnIndexedH(Ljava/lang/String;Ljava/lang/String;)Lorg/apache/lucene/document/Field;  add%(Lorg/apache/lucene/document/Field;)V  !modified# lastModified()J %& '$org/apache/lucene/document/DateField) timeToString(J)Ljava/lang/String; +, *-java/io/FileInputStream/(Ljava/io/File;)V 1 02java/io/BufferedReader4java/io/InputStreamReader6(Ljava/io/InputStream;)V 8 79(Ljava/io/Reader;)V ; 5<contents>TextG(Ljava/lang/String;Ljava/io/Reader;Z)Lorg/apache/lucene/document/Field; @A BLineNumberTableLocalVariableTablefLjava/io/File;doc%Lorg/apache/lucene/document/Document;isLjava/io/FileInputStream;readerLjava/io/Reader; thisLdemo/FileDocument; SourceFileFileDocument.java!  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K* * *Y    O* * *+ % '( e%* * Y"W Y$'124$7%%()* b"* +* +"W Y$'= >@!B""(+,- C* * 0JKM 12 ]4Y5NY-* ':< YZ =>?@A g#<* EW* I* abad"e#J)KL 2* Nh OP :RY*UL* YM,_, N6-,2bO,-"q vwxy z.y8|4: 1cd)ef ghJ)FG 2* I ij f*k=* n o)F)i  ^*k= * +qW  rsF)tuv Rp7_submission/bin/OrderIndex/ShortIndex$1.class0100664000076400007640000000126210227121567021610 0ustar sandeshsandesh.$OrderIndex/ShortIndex$1java/lang/Objectjava/util/Comparatorthis$0LOrderIndex/ShortIndex; Synthetic(LOrderIndex/ShortIndex;)VCode()V   LineNumberTableLocalVariableTablethisLOrderIndex/ShortIndex$1;compare'(Ljava/lang/Object;Ljava/lang/Object;)Ijava/lang/Integer compareTo(Ljava/lang/Integer;)I  o1Ljava/lang/Object;o2 SourceFileShortIndex.java InnerClasses0   8 **+ q   J +,s    !"# p7_submission/bin/OrderIndex/ScalableGraph$Record.class0100664000076400007640000000427610227121567023277 0ustar sandeshsandesh.VOrderIndex/ScalableGraph$Recordjava/lang/Objectnode1Inode2weightJthis$0LOrderIndex/ScalableGraph; Synthetic(LOrderIndex/ScalableGraph;)VCode()V         LineNumberTableLocalVariableTablethis!LOrderIndex/ScalableGraph$Record;getBytes()[Bans[Btemptemp2isetBytes([B)VbbyBequals$(LOrderIndex/ScalableGraph$Record;)Zr1copyTo$(LOrderIndex/ScalableGraph$Record;)VdestgetSize()ItoString()Ljava/lang/String;java/lang/StringBuffer7NODE1: 9(Ljava/lang/String;)V ; 8<append(I)Ljava/lang/StringBuffer; >? 8@ NODE2: B,(Ljava/lang/String;)Ljava/lang/StringBuffer; >D 8E WEIGHT: G(J)Ljava/lang/StringBuffer; >I 8J L 56 8N SourceFileScalableGraph.java InnerClassesOrderIndex/ScalableGraphSRecord     O**+**Z* & '()  _L!A6"* 7+h}T yA!A6$* 7+`h}T yA!A6$* 7+`h}T yA+R,- 012&3+04687>8G9W:\7e=i>o?w@A>C\ #$ % & G& w&  (';*'l+'()*=6++3> d=*Yhx*6-+`3> d=*Yhx* 61+`3> d7*YhyαRGHJ KL"M2J;P@QFRMS]TmQvW{YZ[\Y^f *$%#+,M#+,&+, 1'C3'& ~8'-.N*+*+g/01Y+*+*+*stuv234-y 56[18Y:=*ACF*AHF*KMFO} 1PQR TUp7_submission/bin/OrderIndex/ScalableGraph.class0100664000076400007640000002467310227121567022077 0ustar sandeshsandesh.OrderIndex/ScalableGraphOrderIndex/MetisGraphBUFFSIZEIcachefileprefixLjava/lang/String; cachefilesLjava/util/ArrayList;records"[LOrderIndex/ScalableGraph$Record; cacheCount rotations tempfolder((Ljava/lang/String;Ljava/lang/String;I)VCode(Ljava/lang/String;)V    cache        " Initialize()V $% &LineNumberTableLocalVariableTablethisLOrderIndex/ScalableGraph;gfiletempf buffersize'(Ljava/lang/String;Ljava/lang/String;)Vjava/util/ArrayList0 % 12 4OrderIndex/ScalableGraph$Record6 8(LOrderIndex/ScalableGraph;)V : 7;iadd(IIJ)V Exceptionsutils/SystemExceptionAsaveall C% D >? 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P* **+  ,)  p7_submission/src/0040775000076400007640000000000010227121603014312 5ustar sandeshsandeshp7_submission/src/gamma/0040775000076400007640000000000010227121603015374 5ustar sandeshsandeshp7_submission/src/gamma/GammaCode.java0100644000076400007640000001340410227121603020051 0ustar sandeshsandeshpackage gamma; import java.util.Vector; /** * @author abhishek * * TODO To change the template for this generated type comment go to Window - * Preferences - Java - Code Style - Code Templates */ public class GammaCode { static int logindex[] = { -1, 0, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7 }; public static String encode(long x) { int l, r; //RETURN NULL IF INPUT NOT VALID if (x < 1) return ""; l = log(x); r = (int) (x - Math.pow(2, l)); String ans = new String(""); String rem = new String(""); //ADDING UNARY CODE NUMBER OF TIMES //ans = ans + append("0",l+1); for (int i = 0; i < l; i++) ans = ans + "1"; ans = ans + "0"; if (r == 0) rem = ""; else rem = Integer.toBinaryString(r); for (int i = rem.length(); i < l; i++) rem = "0" + rem; ans = ans + rem; return ans; } //efficiently evaluate string a * n number of times public static String append(String a, int num) { String bin = Integer.toBinaryString(num); return ""; } public static int log(long num) { long y; int ans = -1; y = num; if (y >= 65536) //out of 16 bits { if (y >= 16777216) { y = y >> 24; ans = 23; } else { y = y >> 16; ans = 15; } } else { if (y >= 256) //out of 8 bits { y = y >> 8; ans = 7; } } ans += logindex[(int) y] + 1; return ans; } public static long decode(String x) throws NumberFormatException { if (x.equals("")) return 0; char bits[] = x.toCharArray(); int l, i; long r; l = 0; for (i = 0; i < x.length() && bits[i] == '1'; i++) bits[i] = '0'; bits[i] = '1'; return Long.parseLong(new String(bits, i, x.length() - i), 2); } public static byte[] encode(int[] intarr) { byte ans[]; String code = ""; int i, j, k, rem, count = 0; //CONVERTING ALL INT TO STRING OF GAMMA CODE for (j = 0; j < intarr.length; j++) code += GammaCode.encode(intarr[j]); //APPENDING ZEROS TO MAKE CODE MULTIPLE OF 8 rem = code.length() % 8; if (rem > 0) for (j = 0; j < 8 - rem; j++) code += "1"; //ADDING EACH CHUNKS OF 8 CHARS TO BYTE CharSequence seq; byte b; int start; int temp; rem = code.length(); ans = new byte[rem / 8]; for (j = 0; j < rem; j += 8, count++) { seq = code.subSequence(j, j + 8); //Debugger.writeln("BYTE " + seq); //CALCULATING BYTE FROM SEQ start = 128; b = 0; for (i = 0; i < 8; i++) { if (seq.charAt(i) == '1') b += start; //Debugger.writeln(start + " " + seq.charAt(i)); start = start >> 1; } //Debugger.writeln("byte " + b); //FILLING BYTE TO ANS ARRAY ans[count] = b; } return ans; } public static int[] decode(byte[] bytearr) { int ans[]; int i, j, k; String fullcode = ""; String code; byte b; int count; boolean isneg = false; //CONVERTING TO STRING for (i = 0; i < bytearr.length; i++) { b = bytearr[i]; code = ""; count = 0; if (b < 0) { isneg = true; b &= 127; count++; } else isneg = false; while (b > 0) { if (b % 2 == 0) code = "0" + code; else code = "1" + code; b >>= 1; count++; } for (j = 0; j < 8 - count; j++) code = "0" + code; if (isneg == true) code = "1" + code; fullcode += code; } //NOW TO PARSE THE STRING TO DECODE NUMBERS int index = 0; count = 0; int singleval; Vector vector = new Vector(); int len = fullcode.length(); while (index < len) { count = index; while (index < len && fullcode.charAt(index) == '1') index++; if (index == len) break; count = index - count; index++; code = "1" + fullcode.substring(index, index + count); singleval = Integer.parseInt(code, 2); vector.add(new Integer(singleval)); index += count; } ans = new int[vector.size()]; for (i = 0; i < vector.size(); i++) ans[i] = ((Integer) (vector.get(i))).intValue(); return ans; } }p7_submission/src/gamma/CompressionStats.java0100664000076400007640000001673110227121603021564 0ustar sandeshsandesh/** * */ package gamma; import java.io.BufferedReader; import java.io.File; import java.io.FileNotFoundException; import java.io.FileReader; import java.io.IOException; import java.util.Arrays; import java.util.HashMap; import java.util.Vector; import org.apache.lucene.index.IndexReader; import org.apache.lucene.index.Term; import org.apache.lucene.index.TermDocs; import org.apache.lucene.index.TermEnum; /** * It generates the statistics comparing the sizes of the index compression. * * */ public class CompressionStats { String pathToIndex = ""; HashMap oldNewDocIds = null; int plainCount, origGamma_codedCount, newGamma_codedCount; IndexReader ir = null; /** * Constructor * * @param oldNewDocIds - * map containing a mapping from old doc ids to new doc ids. * @param pathToIndex */ public CompressionStats(HashMap oldNewDocIds, String pathToIndex) { this.pathToIndex = pathToIndex; this.oldNewDocIds = oldNewDocIds; try { this.ir = IndexReader.open(pathToIndex); } catch (IOException e) { e.printStackTrace(); System.exit(1); } } /** * getter for the length fo posting by gamma encoding after the reordering. * * @return */ public int getNewGamma_codedCount() { return newGamma_codedCount; } /** * getter for the length of the posting by gamma encoding before reordering. */ public int getOrigGamma_codedCount() { return origGamma_codedCount; } /** * get the length of the posting without compression. * * @return */ public int getPlainCount() { return plainCount; } public void Statistics() { int gammacount_orig = 0; //for orig postings with gamma encoding int gammacount_new = 0; //for new postings with gamma encoding int plaincount = 0; //for postings without any encoding try { TermEnum te = ir.terms(); //get all terms while (te.next()) { Term t = te.term(); TermDocs td = ir.termDocs(t); //get posting for this term. //Collect all the docids. Have to iterate because TermDocs does // not have api to return an array or vector of docids. Vector v = new Vector(); while (td.next()) { v.add(new Integer(td.doc())); } System.err.println(t.text() + "...."); int orig_docids[] = new int[v.size()]; int new_docids[] = new int[v.size()]; Integer[] docIds1 = new Integer[v.size()]; v.toArray(docIds1); Arrays.sort(docIds1); //sorted the docids for gammacoding // computation. for (int i = 0; i < v.size(); i++) { Integer id = (Integer) v.get(i); orig_docids[i] = id.intValue(); new_docids[i] = ((Integer) oldNewDocIds.get(id)).intValue(); } //Finding Diffs for (int k = 0, s1 = 0, s2 = 0; k < orig_docids.length; k++) { int temp = orig_docids[k]; orig_docids[k] = orig_docids[k] - s1; s1 = temp; temp = new_docids[k]; new_docids[k] = new_docids[k] - s2; s2 = temp; } v = null; t = null; td = null; byte[] gammaPostings_origids = GammaCode.encode(orig_docids); byte[] gammaPostings_newids = GammaCode.encode(new_docids); gammacount_orig += gammaPostings_origids.length; //In bytes gammacount_new += gammaPostings_newids.length; //In bytes plaincount += (orig_docids.length * 4); //sizeof(int) = 4 bytes } plainCount = plaincount; origGamma_codedCount = gammacount_orig; newGamma_codedCount = gammacount_new; System.err.println("The inv-index size with gamma-encoding on orig ids is: " + gammacount_orig / 1024 + " KB"); System.err.println("The inv-index size with gamma-encoding on new ids is: " + gammacount_new / 1024 + " KB"); System.err.println("The inv-index size without any encoding is: " + plaincount / 1024 + " KB"); } catch (IOException e) { e.printStackTrace(); } } public static void main(String[] args) throws IOException, FileNotFoundException { System.out.println("" + args.length + " : " + args[0]); String oldToNewIdFileName = args[0]; HashMap map = new HashMap(); String indexDir = args[1]; File f = new File(oldToNewIdFileName); if (f.exists()) { if (f.canRead() && f.isFile()) ; else throw new IOException("Cannot read file: " + oldToNewIdFileName); } else { throw new FileNotFoundException("file doesnt exist: " + oldToNewIdFileName); } BufferedReader br = new BufferedReader(new FileReader(f)); String oldId, newId, line; while ((line = br.readLine()) != null) { oldId = line.substring(0, line.indexOf('-')); newId = line.substring(line.indexOf('-') + 1); map.put(new Integer(oldId), new Integer(newId)); } String path = (String) (indexDir).trim(); CompressionStats sc = new CompressionStats(map, path); sc.Statistics(); System.out.println("The inv-index size with gamma-encoding on orig ids is: " + sc.getOrigGamma_codedCount()); System.out.println("The inv-index size with gamma-encoding on new ids is: " + sc.getNewGamma_codedCount()); System.out.println("The inv-index size without any encoding is: " + sc.getPlainCount()); /* * IndexReader ir = null; int gammacount = 0; //for postings with gamma * encoding int plaincount = 0; //for postings without any encoding try { * ir = IndexReader.open("index"); TermEnum te = ir.terms(); * while(te.next()) { Term t = te.term(); * * TermDocs td = ir.termDocs(t); Vector v = new Vector(); * while(td.next()) { //int i = td.doc(); * //System.out.println(ir.document(i).get("path")); v.add(new * Integer(td.doc())); } System.out.println(t.text()+"...."); int * docids[] = new int[v.size()]; Integer[] docIds = new * Integer[docids.length]; v.toArray(docIds); Arrays.sort(docIds); * for(int i =0; i "; if (args.length == 0) { System.err.println("Usage: " + usage); System.exit(1); } Date start = new Date(); try { IndexWriter writer = new IndexWriter("/home/sandesh/webmin/indexcompression/work/index", new StandardAnalyzer(), true); indexDocs(writer, new File(args[0])); writer.optimize(); writer.close(); Date end = new Date(); System.out.print(end.getTime() - start.getTime()); System.out.println(" total milliseconds"); } catch (IOException e) { System.out.println(" caught a " + e.getClass() + "\n with message: " + e.getMessage()); } } public static void indexDocs(IndexWriter writer, File file) throws IOException { // do not try to index files that cannot be read if (file.canRead()) { if (file.isDirectory()) { String[] files = file.list(); // an IO error could occur if (files != null) { for (int i = 0; i < files.length; i++) { indexDocs(writer, new File(file, files[i])); } } } else { System.out.println("adding " + file); try { writer.addDocument(FileDocument.Document(file)); } // at least on windows, some temporary files raise this exception with an "access denied" message // checking if the file can be read doesn't help catch (FileNotFoundException fnfe) { ; } } } } } p7_submission/src/demo/FileDocument.java0100644000076400007640000000500010227121603020445 0ustar sandeshsandeshpackage demo; /** * Copyright 2004 The Apache Software Foundation * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ import java.io.File; import java.io.Reader; import java.io.FileInputStream; import java.io.BufferedReader; import java.io.InputStreamReader; import org.apache.lucene.document.Document; import org.apache.lucene.document.Field; import org.apache.lucene.document.DateField; /** A utility for making Lucene Documents from a File. */ public class FileDocument { /** Makes a document for a File.

The document has three fields:

  • path--containing the pathname of the file, as a stored, tokenized field;
  • modified--containing the last modified date of the file as a keyword field as encoded by DateField; and
  • contents--containing the full contents of the file, as a Reader field; */ public static Document Document(File f) throws java.io.FileNotFoundException { // make a new, empty document Document doc = new Document(); // Add the path of the file as a field named "path". Use a Text field, so // that the index stores the path, and so that the path is searchable doc.add(Field.UnIndexed("path", f.getPath())); // Add the last modified date of the file a field named "modified". Use a // Keyword field, so that it's searchable, but so that no attempt is made // to tokenize the field into words. doc.add(Field.UnIndexed("modified", DateField.timeToString(f.lastModified()))); // Add the contents of the file a field named "contents". Use a Text // field, specifying a Reader, so that the text of the file is tokenized. // ?? why doesn't FileReader work here ?? FileInputStream is = new FileInputStream(f); Reader reader = new BufferedReader(new InputStreamReader(is)); doc.add(Field.Text("contents", reader, true)); // return the document return doc; } private FileDocument() {} } p7_submission/src/utils/0040775000076400007640000000000010227121603015452 5ustar sandeshsandeshp7_submission/src/utils/SystemException.java0100644000076400007640000000124010227121603021450 0ustar sandeshsandeshpackage utils; /* * Created on Feb 13, 20043:04:38 PM *SystemException.java * */ /** * @author kaushal SystemException */ public class SystemException extends Exception { /** * */ public SystemException() { super(); } /** * @param arg0 */ public SystemException(String arg0) { super(arg0); } /** * @param arg0 */ public SystemException(Throwable arg0) { super(arg0); } /** * @param arg0 * @param arg1 */ public SystemException(String arg0, Throwable arg1) { super(arg0, arg1); } public static void main(String[] args) { } }p7_submission/src/utils/SystemProperties.java0100644000076400007640000000212110227121603021645 0ustar sandeshsandesh/* * Created on Feb 13, 20044:13:37 PM *SystemProperties.java * */ package utils; import java.io.FileInputStream; import java.io.FileNotFoundException; import java.io.IOException; import java.io.InputStream; import java.util.Properties; /** * @author kaushal SystemProperties */ public class SystemProperties { private static Properties props = new Properties(); static { InputStream instream = null; try { instream = new FileInputStream("./resources/systemproperties.prop"); } catch (FileNotFoundException e) { e.printStackTrace(); System.exit(0); } try { props.load(instream); } catch (IOException e) { } } public static String getProperty(String name) { return (String) props.getProperty(name); } public static void main(String[] args) { System.out.println(getProperty("BASEDIR")); } public static void addProperty(Object name, Object value) { props.put(name, value); } }p7_submission/src/utils/SystemConstants.java0100664000076400007640000000112110227121603021466 0ustar sandeshsandesh/* * Created on Mar 27, 2003 *Author : Kaushal Mittal (04329024) *Filename * */ package utils; /** * @author kaushal * * TODO To change the template for this generated type comment go to Window - * Preferences - Java - Code Style - Code Templates */ public final class SystemConstants { public static final String FIELDNAME = "fieldname"; public static final String DEFAULTGRAPHFILE = "graphfile"; public static final String MAXINT = "maxint"; public static final String INDEXDIRPATH = "indexdir"; public static final String TEMPFOLDER = "tempfolder"; }p7_submission/src/utils/ProcessInvoker.java0100664000076400007640000000224210227121603021266 0ustar sandeshsandesh/* * Created on Feb 13, 2004 * * TODO To change the template for this generated file go to * Window - Preferences - Java - Code Style - Code Templates */ package utils; /** * @author kaushal * * TODO To change the template for this generated type comment go to Window - * Preferences - Java - Code Style - Code Templates */ public class ProcessInvoker { public static Process invoke(String command) throws SystemException { Runtime env = Runtime.getRuntime(); Process process; try { process = env.exec(command); } catch (Exception e) { System.out.println(e.getMessage()); throw new SystemException("Wrong Command for execution"); } return process; } public static void main(String[] args) { StringBuffer sascommand = new StringBuffer(SystemProperties.getProperty("SASApplication")); sascommand.append("tests/test3.sas"); Debugger.writeln(0, sascommand.toString()); try { invoke(sascommand.toString()); } catch (SystemException e) { e.printStackTrace(); } } }p7_submission/src/utils/Debugger.java0100644000076400007640000000273510227121603020043 0ustar sandeshsandesh/* * Created on Feb 13, 20044:19:40 PM *Debugger.java * */ package utils; import java.io.FileWriter; import java.io.IOException; import java.io.OutputStream; import java.io.PrintWriter; /** * @author kaushal Debugger */ public class Debugger { private static PrintWriter out = new PrintWriter((OutputStream) System.out); static { StringBuffer logFileName = new StringBuffer(SystemProperties.getProperty("BASEDIR")); logFileName.append(SystemProperties.getProperty("LogFileName")); System.out.println(logFileName.toString()); //TO DO //validate the log file name generated try { out = new PrintWriter(new FileWriter(logFileName.toString())); } catch (IOException e) { System.out.println(e.getMessage()); //TO DO // Show Error dialog. } } public static void write(String s) { out.print(s); out.flush(); } public static void write(int DebugLevel, String s) { out.print(s); out.flush(); //TO DO implement debug levels } public static void writeln(String s) { out.println(s); out.flush(); } public static void writeln(int DebugLevel, String s) { out.println(s); out.flush(); //TO DO implement debug levels } public static void main(String args[]) { Debugger.write("Kaushal"); } }p7_submission/src/indexerWrapper/0040775000076400007640000000000010227121603017311 5ustar sandeshsandeshp7_submission/src/indexerWrapper/LuceneWrapper.java0100664000076400007640000002414010227121603022726 0ustar sandeshsandesh/* * Created on Mar 27, 2003 *Author : Kaushal Mittal (04329024) *Filename * */ package indexerWrapper; import java.io.IOException; import java.util.HashMap; import java.util.Vector; import org.apache.lucene.index.IndexReader; import org.apache.lucene.index.Term; import org.apache.lucene.index.TermDocs; import org.apache.lucene.index.TermEnum; import org.apache.lucene.index.TermFreqVector; import utils.SystemConstants; import utils.SystemException; import utils.SystemProperties; /** * This is an implementation of theIndexerWrapper for Lucene. This * implementation provide an interface to the index created by lucene. One can * use this to get any kind of information stored in the index. * * @see indexerWrapper.IndexerWrapper * */ public class LuceneWrapper implements IndexerWrapper { /* * The indexreader */ private IndexReader reader = null; /* * number of document in the corpus. */ private static int numberOfDocs = -1; /* * Singleton object */ private static IndexerWrapper wrapper = null; /* * Used to implemetn singleton. */ private static int count = 0; /** * A method to get the single instance for the Lucene wrapper. * * @param indexDirPath - * The path of the index directory. * @return - An instance of the LuceneWrapper */ public static IndexerWrapper getIndexWrapper(String indexDirPath) { // try { if (count == 0) { count++; wrapper = new LuceneWrapper(indexDirPath); } return wrapper; } catch (SystemException e) { System.out.println(e.getMessage()); return null; } } private LuceneWrapper(String indexDirPath) throws SystemException { try { reader = IndexReader.open(indexDirPath); } catch (IOException e) { throw new SystemException("Unable to locate the inverted index"); } } /** * @see indexerWrapper.IndexerWrapper#getDocIds() */ public Vector getDocIds() { int maxdocId = reader.maxDoc(); Vector vec = new Vector(); for (int i = 0; i < maxdocId; i++) { vec.add(new Integer(i)); } return vec; } /** * @see indexerWrapper.IndexerWrapper#getTerms() */ public Vector getTerms() throws IOException { Vector vec = new Vector(); TermEnum termEnum = reader.terms(); if (termEnum != null) { while (termEnum.next()) { Term term = termEnum.term(); vec.add(term.text()); } } return vec; } /** * @see IndexerWrapper#getPosting(long) */ public Vector getPosting(String termStr) throws IOException { Term term = new Term(SystemProperties.getProperty(SystemConstants.FIELDNAME), termStr.toLowerCase()); Vector vec = new Vector(); TermDocs docs = reader.termDocs(term); if (docs != null) { while (docs.next()) { vec.add(new Integer(docs.doc())); } } return vec; } /** * @see IndexerWrapper#getPostingArray(String) */ public int[] getPostingArray(String termStr) throws IOException { Term term = new Term(SystemProperties.getProperty(SystemConstants.FIELDNAME), termStr.toLowerCase()); int size = docCount(termStr); TermDocs docs = reader.termDocs(term); int docArr[] = new int[size]; int count = 0; if (docs != null) { while (docs.next()) { docArr[count++] = docs.doc(); } } return docArr; } /** * @see indexerWrapper.IndexerWrapper#getTerms(long) */ public String[] getTerms(int docId) throws IOException, SystemException { // get the term frequency vector TermFreqVector vec = null; try { String str = SystemProperties.getProperty(SystemConstants.FIELDNAME); vec = reader.getTermFreqVector(docId, SystemProperties.getProperty(SystemConstants.FIELDNAME)); } catch (IOException e) { } if (!(vec == null || vec.size() == 0)) { return vec.getTerms(); } return null; } /** * returns a hashmap containing the terms and corresponding TFIDF score for * the given document. For an empty document returns an empty haspmap. * * @see indexerWrapper.IndexerWrapper#getTermTFIDFMap(long) */ public HashMap getTermTFIDFMap(int docId) throws SystemException { HashMap returnMap = new HashMap(); // get the term frequency vector TermFreqVector vec = null; try { String str = SystemProperties.getProperty(SystemConstants.FIELDNAME); vec = reader.getTermFreqVector(docId, SystemProperties.getProperty(SystemConstants.FIELDNAME)); } catch (IOException e) { } // check if some problem if (!(vec == null || vec.size() == 0)) { int freqArr[] = vec.getTermFrequencies(); String termsArr[] = vec.getTerms(); for (int j = 0; j < vec.size(); j++) { int freq = freqArr[j]; int d_t = 0; try { d_t = docCount((String) termsArr[j]); } catch (IOException e) { throw new SystemException("Unabble to read the index file "); } // caculate TFIDF double TFIDF = -1; if (freq == 0) { TFIDF = 0; } else { TFIDF = (1 + Math.log(1 + Math.log(freq))) * Math.log((1 + getNumberOfDocs()) / d_t); } returnMap.put(termsArr[j], new Double(TFIDF)); } } return returnMap; } public HashMap getTermFrequencyMap(int docId) throws SystemException { HashMap returnMap = new HashMap(); // get the term frequency vector TermFreqVector vec = null; try { String str = SystemProperties.getProperty(SystemConstants.FIELDNAME); vec = reader.getTermFreqVector(docId, SystemProperties.getProperty(SystemConstants.FIELDNAME)); } catch (IOException e) { } // check if some problem if (!(vec == null || vec.size() == 0)) { int freqArr[] = vec.getTermFrequencies(); String termsArr[] = vec.getTerms(); for (int j = 0; j < vec.size(); j++) { int freq = freqArr[j]; returnMap.put(termsArr[j], new Integer(freq)); } } return returnMap; } /** * @see indexerWrapper.IndexerWrapper#getDocFrequencyMap(long) */ public HashMap getDocFrequencyMap(String termText) throws IOException { Term term = new Term(SystemProperties.getProperty(SystemConstants.FIELDNAME), termText.toLowerCase()); TermDocs docs = reader.termDocs(term); HashMap map = new HashMap(); while (docs.next()) { map.put(new Integer(docs.doc()), new Integer(docs.freq())); } return map; } /** * @see indexerWrapper.IndexerWrapper#getNumberOfDocs() */ public int getNumberOfDocs() { if (numberOfDocs == -1) { numberOfDocs = reader.numDocs(); } return numberOfDocs; } /** * @see indexerWrapper.IndexerWrapper#getMaxDocId() */ public int getMaxDocId() { return reader.maxDoc() - 1; } /* * (non-Javadoc) returns the number of document containing the given term. * * @see indexerWrapper.IndexerWrapper#docCount(long) */ public int docCount(String termStr) throws IOException { Term term = new Term((String) SystemProperties.getProperty(SystemConstants.FIELDNAME), termStr.toLowerCase()); return reader.docFreq(term); } /* * (non-Javadoc) * * @see indexerWrapper.IndexerWrapper#getDocIdsArray() */ public int[] getDocIdsArray() { // reader returns maximum document id +1 int maxdocId = reader.maxDoc(); int docArr[] = new int[maxdocId]; for (int i = 0; i < maxdocId; i++) { docArr[i] = i; } return docArr; } /* * (non-Javadoc) * * @see indexerWrapper.IndexerWrapper#getDocFrequencyArray(java.lang.String) */ public int[][] getDocFrequencyArray(String termStr) throws IOException { Term term = new Term(SystemProperties.getProperty(SystemConstants.FIELDNAME), termStr.toLowerCase()); int size = docCount(termStr); TermDocs docs = reader.termDocs(term); int docFreqArr[][] = new int[size][2]; while (docs.next()) { docFreqArr[count][0] = docs.doc(); docFreqArr[count][1] = docs.freq(); } return docFreqArr; } public String getPath(int docId) throws IOException { return reader.document(docId).get("path"); } public static void main(String[] args) { try { LuceneWrapper wrap = new LuceneWrapper(args[0]); System.out.println(wrap.getMaxDocId()); System.out.println(wrap.getNumberOfDocs()); int[][] temp = wrap.getDocFrequencyArray("IndexWriter"); HashMap map = wrap.getTermTFIDFMap(5); String terms[] = wrap.getTerms(5); int[] docs = wrap.getPostingArray("practised"); for (int i = 0; i < docs.length; i++) System.out.println("" + docs[i]); System.out.println(map.toString()); } catch (Exception e) { e.printStackTrace(); } } public Vector getTermVector(int docId) throws SystemException { String arr[] = null; try { arr = getTerms(docId); } catch (IOException e) { throw new SystemException(e.getMessage()); } Vector vec = new Vector(); if (arr != null) { for (int i = 0; i < arr.length; i++) { vec.add(arr[i]); } } return vec; } }p7_submission/src/indexerWrapper/IndexerWrapper.java0100664000076400007640000001121710227121603023112 0ustar sandeshsandesh/* * Created on Mar 27, 2003 *Author : Kaushal Mittal (04329024) *Filename * */ package indexerWrapper; import java.io.IOException; import java.util.HashMap; import java.util.Vector; import utils.SystemException; /** * This is an interface that provides the methods for getting required data from * an inverted index using any indexing tool. This is provided to support * integration to different indexing tools. * */ public interface IndexerWrapper { /** * This method returns a vector of all the document ids in the index. * * @return Vector containing all the doc ids. */ public Vector getDocIds(); /** * this method returns the doc-ids in the index as an array. * * @return - an array of integer doc ids. */ public int[] getDocIdsArray(); /** * returns the dictionary of the corpus. It uses the inverted index to get * all the terms in the corpus. * * @return a Vector of all the terms. * @throws IOException */ public Vector getTerms() throws IOException; /** * It gives the posting for a given term. Given a term it return all the * documnet ids, that contains the term. * * @param term - * the input term as a string. * @return - a vector of all doc ids containg the term * @throws IOException */ public Vector getPosting(String term) throws IOException; /** * It returns the posting as an array. * * @param term - * the input term as a String * @return - an array of all the document ids containing the term * @throws IOException - * If unable to read the term. */ public int[] getPostingArray(String term) throws IOException; /** * It returns a vector of all the terms in a given document. * * @param docId - * tjhe input document id. * @return - An array of all the terms as String for the given document id. * @throws IOException * @throws SystemException */ public String[] getTerms(int docId) throws IOException, SystemException; /** * returns the path of the given document in the corpus * * @param docId - * the document id for a document in the corpus. * @return - The path of the document on the file system * @throws IOException - * if unable to read the index. */ public String getPath(int docId) throws IOException; /** * It returns a hashmap of the terms and its TFIDF score in a document. * Given a document, It reads the index and returns a map of the terms in * the document and the TFIDF score of the term in the document. * * @param docId - * The document id of the document in the corpus. * @return HashMap a map containg the terms and their frequencies in the * corpus. * @throws SystemException */ public HashMap getTermTFIDFMap(int docId) throws SystemException; /** * * @param docId * @return @throws * SystemException */ public HashMap getTermFrequencyMap(int docId) throws SystemException; /** * Given a term, it returns the list of document id along with the frequency * of the term in the documenet. * * @param term - * the term for which the document and frequency is required. * @return - the HashMap containing the document ids, and the frequncy. * @throws IOException */ public HashMap getDocFrequencyMap(String term) throws IOException; /** * It Returns the document id and the frequency of the term in the document, * for all document containing the term as a two dimensional array. * * @param term - * the term for which the document -frequncy information is * required, * @return - an array containing the document id and the frequncy. * @throws IOException */ public int[][] getDocFrequencyArray(String term) throws IOException; /** * It returns the total number of documents in the corpus. * * @return @throws * IOException */ public int getNumberOfDocs() throws IOException; /** * Get the maximum document id. * * @return @throws * IOException */ public int getMaxDocId() throws IOException; /** * Returns the number of document containg the term. * * @param term * @return @throws * IOException */ public int docCount(String term) throws IOException; public Vector getTermVector(int docId) throws SystemException; }p7_submission/src/OrderIndex/0040775000076400007640000000000010227403311016354 5ustar sandeshsandeshp7_submission/src/OrderIndex/ShortIndex.java0100644000076400007640000000715510227121603021312 0ustar sandeshsandesh/* * Created on 26 Jun, 2004 * * TODO To change the template for this generated file go to * Window - Preferences - Java - Code Style - Code Templates */ package OrderIndex; import java.util.Arrays; import java.util.Comparator; import java.util.Iterator; import java.util.Vector; import utils.SystemException; /** * * * This class represents a set of Doc-ids. */ public class ShortIndex { /* Vector containing the doc ids */ Vector docIdList = null; /* The constructor for the docindex */ public ShortIndex() { docIdList = new Vector(); } /** * Constructor taking a list of doc ids. * * @param vec */ public ShortIndex(Vector vec) { docIdList = vec; } /** * Adds the doc id into the list. * * @param docId * @throws SystemException */ public void add(int docId) throws SystemException { if (docIdList != null) { docIdList.add(new Integer(docId)); } else { throw new SystemException("Shortindex needs to be intialised"); } } /** * Adds the Integer doc id into the list. */ public void add(Integer docId) throws SystemException { if (docIdList != null && docId != null) { docIdList.add(docId); } else { throw new SystemException("Shortindex needs to be intialised"); } } /** * returns an iterator to the index * * @return */ public Iterator getIterator() { if (docIdList != null) return docIdList.iterator(); else return null; } /** * This function performs sampling on the doclist and returns the sampled * document ids in a ShortIndex object * * @param measure : * Determines how much sample to take * @return The sampled ShortIndex object */ public ShortIndex sample(double measure) { SamplerInterface sampler = new RandomSampler(); return new ShortIndex(sampler.sample(docIdList, measure)); } /* * removes all references and nullify the short index . */ public void nullify() { for (int i = 0; i < docIdList.size(); i++) { docIdList.set(i, null); } docIdList = null; } public String toString() { return docIdList.toString(); } /** * returns the doc ids as asorted array of docids. * * @return */ public int[] getSortedDocIdsArray() { Comparator comp = new Comparator() { public int compare(Object o1, Object o2) { return (((Integer) o1).compareTo((Integer) o2)); } }; Object[] docIds = docIdList.toArray(); Arrays.sort(docIds); int returnArr[] = new int[docIds.length]; for (int i = 0; i < docIds.length; i++) { returnArr[i] = ((Integer) docIds[i]).intValue(); } return returnArr; } /** * Returns the number of entries. * * @return The number of entries. */ public int size() { return docIdList.size(); } /** * removes a given doc id * * @param index * @return */ public Integer remove(int index) { int size = size(); if (size > 0 && index < size) return (Integer) docIdList.remove(index); return null; } /** * removes the given doc id. * * @param obj * @return */ public boolean remove(Object obj) { int size = size(); if (size > 0) docIdList.remove(obj); return true; } }p7_submission/src/OrderIndex/SamplerInterface.java0100664000076400007640000000052110227121603022437 0ustar sandeshsandesh/* * Created on Apr 6, 2005 * * TODO To change the template for this generated file go to * Window - Preferences - Java - Code Style - Code Templates */ package OrderIndex; import java.util.Vector; /** * An interface for the sampler */ public interface SamplerInterface { public Vector sample(Vector vec, double measure); }p7_submission/src/OrderIndex/RandomSampler.java0100664000076400007640000000153610227121603021766 0ustar sandeshsandeshpackage OrderIndex; import java.util.Random; import java.util.Vector; /** * This is the default sampler used. * */ public class RandomSampler implements SamplerInterface { /** * sample the list returning one out of every pow(n, measure) elements in * the vector. Measure is a real number betwween 0 and 1. n is the size of * the list. */ public Vector sample(Vector vec, double measure) { int j, length = (int) Math.floor(Math.pow(vec.size(), measure)); Vector returnVec = new Vector(); if (length == 0) { return returnVec; } Random ran = new Random(); int len = (vec.size() / length) * length; for (j = 0; j < len; j += length) { int r = ran.nextInt(length); returnVec.add(vec.get(j + r)); } return returnVec; } }p7_submission/src/OrderIndex/MetisGraph.java0100664000076400007640000002652610227155417021305 0ustar sandeshsandesh/* * Created on 6 Apr, 2005 * */ package OrderIndex; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.File; import java.io.FileNotFoundException; import java.io.FileReader; import java.io.FileWriter; import java.io.IOException; import java.util.ArrayList; import java.util.HashMap; import java.util.Iterator; import java.util.Set; import utils.ProcessInvoker; import utils.SystemConstants; import utils.SystemException; import utils.SystemProperties; /** * @author abhishek This class implements graph operation wrt metis package. It * is scalable * */ public class MetisGraph extends Graph { /** * To maintain graph in main memory */ ArrayList graph = new ArrayList(); /** * Forward Mapping maintains enrties from node ids to consecutive numbers. * Reverse mapping maintains enrties from consecutive numbers to node ids. */ HashMap forMap = new HashMap(); //HASH ON NODE ID ArrayList revMap = new ArrayList(); // MAP FROM INT ID TO NODE ID int nodes = 0; int edges = 0; /** * * @param gfile */ public MetisGraph(String gfile) { super(gfile); } /** * Returns the name of output file of partition program * * @return */ public String getOuputFile() { return graphFile + ".part.2"; } public void add(int node1, int node2, long weight) throws utils.SystemException { HashMap map; //LONG OBJECTS CORRESPONDING TO node1,node2 if (weight < 0) throw new utils.SystemException("Illegal weight of an edge"); Long l1 = new Long(node1); Long l2 = new Long(node2); boolean addednode1 = false; boolean addednode2 = false; int nodeindex1 = 0, nodeindex2 = 0; // ADD NODES TO forMap and revMap if (!forMap.containsKey(l1)) { nodeindex1 = nodes; nodes++; Long lnodes = new Long(nodeindex1); forMap.put(l1, lnodes); revMap.add(nodeindex1, l1); addednode1 = true; } else nodeindex1 = ((Long) (forMap.get(l1))).intValue(); if (!forMap.containsKey(l2)) { nodeindex2 = nodes; nodes++; Long lnodes = new Long(nodeindex2); forMap.put(l2, lnodes); revMap.add(nodeindex2, l2); addednode2 = true; } else nodeindex2 = ((Long) (forMap.get(l2))).intValue(); //ADDING NODED TO GRAPH HASH if (addednode1) { map = new HashMap(); graph.add(nodeindex1, map); map.put(new Long(nodeindex2), new Long(weight)); edges++; } else { map = (HashMap) graph.get(nodeindex1); Long lindex = new Long(nodeindex2); if (!map.containsKey(lindex)) edges++; map.put(lindex, new Long(weight)); } if (addednode2) { map = new HashMap(); graph.add(nodeindex2, map); map.put(new Long(nodeindex1), new Long(weight)); } else { map = (HashMap) graph.get(nodeindex2); Long lindex = new Long(nodeindex1); map.put(lindex, new Long(weight)); } } /** * To set the nodes of the graph. All previous nodes and edges will be * deleted. */ public void setNodes(int[] newnodes) { //DELETE ALL NODES AND EDGES. // should take care of duplicates deleteGraph(); addNodes(newnodes); } /** * Add nodes to the existing graph. Not implemented yet. * * @param nodeids: * Nodes to be added in graph. */ public void addNodes(int[] newnodes) { Long index, nodeid; for (int i = 0; i < newnodes.length; i++) { nodeid = new Long(newnodes[i]); if (forMap.containsKey(nodeid)) continue; index = new Long(nodes); forMap.put(nodeid, index); revMap.add(nodes, nodeid); graph.add(nodes, new HashMap()); nodes++; } } /** * Add a node to the existing graph. Not implemented yet. * * @param newnode: * Node to be added in graph. */ public void addNode(int newnode) { Long nodeid = new Long(newnode); if (!forMap.containsKey(nodeid)) { Long index = new Long(nodes); forMap.put(nodeid, index); revMap.add(nodes, nodeid); graph.add(nodes, new HashMap()); nodes++; } } void deleteGraph() { forMap.clear(); revMap.clear(); HashMap thmap; for (int i = 0; i < nodes; i++) { thmap = (HashMap) graph.get(0); thmap.clear(); } graph.clear(); nodes = edges = 0; } public void writeToFile() throws utils.SystemException { writeToFile(this.graphFile); } public void writeToFile(String filename) throws utils.SystemException { String outfile = filename; this.graphFile = filename; File file = new File(outfile); FileWriter writer; BufferedWriter bufwriter; try { writer = new FileWriter(file); bufwriter = new BufferedWriter(writer); bufwriter.write(nodes + " " + edges + " 1"); for (int i = 1; i <= nodes; i++) { bufwriter.write("\n "); HashMap tmap = (HashMap) graph.get(i - 1); Set set2 = tmap.keySet(); Iterator iterator2 = set2.iterator(); while (iterator2.hasNext()) { Long node2 = (Long) iterator2.next(); Long weight = (Long) tmap.get(node2); bufwriter.write(node2.intValue() + 1 + " " + weight + " "); } } bufwriter.write(" "); bufwriter.close(); writer.close(); //Debugger.writeln("\n@@@@@@@@@@@@@@@@@@@@GRAPH Nodes: " + nodes + // " Edges: " + edges + "\n\n" + graph.toString()); } catch (Exception e) { throw new utils.SystemException(e.getMessage()); } } public ShortIndex[] partition(int num) throws SystemException { // save the graph into a file // use jni to invoke metics and partition the graph // the result will be two graph files // load the graph files to create two graphs //return an array of two graphs //Debugger.writeln("+++++++++++Partitioning graph Started : "); ShortIndex[] sindices = new ShortIndex[2]; sindices[0] = new ShortIndex(); sindices[1] = new ShortIndex(); if (nodes < 3) { //Debugger.writeln("Not Calling the Partitioning algorithm"); if (nodes == 2) { sindices[0].add(((Long) revMap.get(0)).intValue()); sindices[1].add(((Long) revMap.get(1)).intValue()); } else if (nodes == 1) sindices[0].add(((Long) revMap.get(0)).intValue()); //Debugger.writeln("%%%%%%%%%%%%%%%%%%%%Partitions of the graph are // : -------------"); //Debugger.writeln("Parition 1: " + sindices[0].toString()); //Debugger.writeln("Parition 2: " + sindices[1].toString()); return sindices; } String program = SystemProperties.getProperty("PARTITION_GRAPH"); program = program + " " + graphFile + " " + num; Process p = ProcessInvoker.invoke(program); try { int exitVal = p.waitFor(); } catch (InterruptedException e) { throw new SystemException("Metics failed to partition the graph."); } File file = new File(getOuputFile()); FileReader reader; BufferedReader bufreader; try { reader = new FileReader(file); bufreader = new BufferedReader(reader); } catch (FileNotFoundException e) { throw new utils.SystemException(e.getMessage()); } int count = 0; try { String line = bufreader.readLine(); while (line != null && !line.equals("") && count < revMap.size()) { //Debugger.writeln("Count is : " + count + " line read is :" + // line); if (count >= revMap.size()) { //Debugger.writeln("\nERROR: Need to debug"); } Long l = (Long) revMap.get(count); if (line.equals("0")) sindices[0].add(l.intValue()); else sindices[1].add(l.intValue()); line = bufreader.readLine(); count++; } bufreader.close(); reader.close(); file.delete(); } catch (IOException e) { throw new utils.SystemException(e.getMessage()); } //Debugger.writeln("^^^^^^^^^^^^^^^^Partitions of the graph are : // -------------"); //Debugger.writeln("Parition 1: " + sindices[0].toString()); //Debugger.writeln("Parition 2: " + sindices[1].toString()); return sindices; } public String toString() { Set s = forMap.keySet(); Iterator it = s.iterator(); String ans = ""; Long key, val; ans += "FORWARD MAP \n"; while (it.hasNext()) { key = (Long) it.next(); val = (Long) forMap.get(key); ans += "\n " + key + " " + val; } ans += "\nREVERSE MAP \n"; for (int i = 0; i < nodes; i++) { ans += "\n " + i + " " + (Long) revMap.get(i); } ans += "\nGRAPH \n"; for (int i = 0; i < nodes; i++) { HashMap tmap = (HashMap) graph.get(i); Set set = tmap.keySet(); Iterator iterator = set.iterator(); ans += "\n" + i + ": "; while (iterator.hasNext()) { Long node = (Long) iterator.next(); Long weight = (Long) tmap.get(node); ans += node.intValue() + " " + weight + " "; } } return ans; } public static void main(String args[]) { //String gfile = // "/home/abhishek/courses/webmin/project/bin/work/graph.txt"; MetisGraph g = new MetisGraph((String) SystemProperties.getProperty(SystemConstants.DEFAULTGRAPHFILE)); ShortIndex[] sindices; try { g.addNode(1); g.addNode(2); g.addNode(3); g.addNode(4); g.add(1, 3, 1); //g.addNode(2); //g.addNode(3); //g.add(1,4,5); //g.add(1,3,10); //g.add(2,3,0); //g.add(1,3,0); g.writeToFile(); //Debugger.writeln(g.toString()); sindices = g.partition(2); //Debugger.writeln(g.toString()); //sindices = g.partition(2); System.out.println(g.toString()); System.out.println(sindices[0].toString()); System.out.println(sindices[1].toString()); //Debugger.writeln(sindices[0].toString()); //Debugger.writeln(sindices[1].toString()); } catch (utils.SystemException e) { //Debugger.writeln("Error:" + e.getMessage()); } } }p7_submission/src/OrderIndex/OrderIndex.java0100644000076400007640000004164210227403276021276 0ustar sandeshsandeshpackage OrderIndex; import indexerWrapper.IndexerWrapper; import indexerWrapper.LuceneWrapper; import java.io.IOException; import java.util.HashMap; import java.util.Iterator; import java.util.Set; import utils.Debugger; import utils.SystemConstants; import utils.SystemException; import utils.SystemProperties; /** * This is an implementation for the Blelloch approach for reordering documents * using a top down hierarchical clustering approach. * */ public class OrderIndex { // wrapper to read the index private IndexerWrapper wrapper = null; // configuration parameter - Take one out every pow(n, RHO) document for // sampling. private static double RHO = 0.2; // configuration parameter - To ignore the most frequent terms. private static int THRESHOLD = 10; // mapping from the old id to new doc id private HashMap oldNewDocid = new HashMap(); //Global cache for cosinesimilarity(d1,d2). private HashMap cosineCache = new HashMap(); //Scalable graph is built above this threshold private static final int sampleThreshold = 20000; //chunk size for scalable graph , should be equivalent to page size private static final int cacheChunkSize = 10000; int maxDocCount = 0; /** * Constructor. * * @param wrapper - * the IndexerWrapper to get information from the index. * @see IndexerWrapper * @throws SystemException */ public OrderIndex(IndexerWrapper wrapper) throws SystemException { if (wrapper != null) { this.wrapper = wrapper; try { maxDocCount = wrapper.getMaxDocId(); } catch (IOException e) { throw new SystemException("Index do not contain any documnets"); } } else throw new SystemException("Could not locate index"); try { RHO = Double.parseDouble((String) SystemProperties.getProperty("RHO")); THRESHOLD = Integer.parseInt((String) SystemProperties.getProperty("THRESHOLD")); } catch (Exception e) { } } /** * This method orders the document Ids in the index to get a mapping from * Old doc ids to the new doc Ids. * * @param I - * List of Old DocIds. * @param l - * lowest doc id to be assigned * @param h - * highest doc id to be assigned. * @param IL - * Docids of the Cluster to the left of current cluster. * @param IR - * docids in the cluster to the right of the current cluster * @throws SystemException */ public void orderIndex(ShortIndex I, int l, int h, ShortIndex IL, ShortIndex IR) throws SystemException { // Assigns the numbers between l and h to the documents of an index I, // which must have exactly (h-l+1)documents if (l == h) { Object docids[] = I.docIdList.toArray(); oldNewDocid.put(docids[0], new Integer(l)); return; } ShortIndex I1 = new ShortIndex(), I2 = new ShortIndex(); // split the index splitIndex(I, I1, I2); // order the clusters OrderCluster(IL, I1, I2, IR); // recursively call order index. int m = l + I1.size(); if (m != l) orderIndex(I1, l, m - 1, IL, I2); if ((m - 1) != h) orderIndex(I2, m, h, I1, IR); } /** * This function performs spliting operation on input index. The criteria * for spliting is similarity measure. First a sample is taken. A document * document similarity graph is created with edges betwenn documents * containing rare words in the sample. The graph is partitioned into two * using min-cut algorithm. The documents in the index are partitioned based * on similiaty with the center of mass of the above partitions. * * @param sindex * The index to be splitted * @param sindex1 * The first split. It should be initialized * @param sindex2 * The second split.It should be initialized */ private void splitIndex(ShortIndex sindex, ShortIndex sindex1, ShortIndex sindex2) throws SystemException { ShortIndex sample = sindex.sample(RHO); // build the graph for the sample long starttime = System.currentTimeMillis(); Graph G = buildGraph(sample); // partition the graph ShortIndex partitionedIndexArr[] = null; try { partitionedIndexArr = G.partition(2); if (partitionedIndexArr[0].size() == 0) { partitionedIndexArr[0].add(partitionedIndexArr[1].remove(0)); Debugger.writeln("Gone for approximation : " + sindex); } if (partitionedIndexArr[1].size() == 0) { partitionedIndexArr[1].add(partitionedIndexArr[0].remove(0)); Debugger.writeln("Gone for approximation : " + sindex); } } catch (SystemException e) { e.printStackTrace(); System.exit(1); } // centre of mass for the two partitions HashMap m1 = centerofMass(partitionedIndexArr[0]); HashMap m2 = centerofMass(partitionedIndexArr[1]); // if the partitions have very similar center of mass if (cosineSimilarity(m1, m2) > .999999) { // if the sample contains the whole index under consideration // return the partition as it is. if (sample.size() == sindex.size()) { Iterator it = partitionedIndexArr[0].getIterator(); while (it.hasNext()) { Object obj = it.next(); sindex1.add((Integer) obj); } it = partitionedIndexArr[1].getIterator(); while (it.hasNext()) { Object obj = it.next(); sindex2.add((Integer) obj); } } else { // if the sample is a subset of sindex then // return sample as oine partition and remaining elemnets as // another partition Iterator it = sample.getIterator(); while (it.hasNext()) { Object obj = it.next(); sindex1.add((Integer) obj); sindex.remove((Integer) obj); } it = sindex.getIterator(); while (it.hasNext()) { Object obj = it.next(); sindex2.add((Integer) obj); } } } else { // partition the sindex into two partitions based on similarity to // the two partitions of the graph. Iterator it = sindex.getIterator(); // partition the doc ids into the two partitions. while (it.hasNext()) { Integer docId = (Integer) it.next(); HashMap termTFIDFMap = null; termTFIDFMap = wrapper.getTermTFIDFMap(docId.intValue()); if (cosineSimilarity(m1, termTFIDFMap) > cosineSimilarity(m2, termTFIDFMap)) { sindex1.add(docId); } else { sindex2.add(docId); } } } } /** * * Builds a document document graph for the documnets in the sample given. * * @param sample * @return */ private Graph buildGraph(ShortIndex sample) throws SystemException { // new graph MetisGraph G; if (sample.size() > sampleThreshold) G = new ScalableGraph((String) SystemProperties.getProperty(SystemConstants.DEFAULTGRAPHFILE) , (String) SystemProperties.getProperty(SystemConstants.TEMPFOLDER) , cacheChunkSize); else G = new MetisGraph((String) SystemProperties.getProperty(SystemConstants.DEFAULTGRAPHFILE)); //sort the docIds int docIdArr[] = sample.getSortedDocIdsArray(); HashMap allterms = new HashMap(); for (int k = 0; k < docIdArr.length; k++) { int docId = docIdArr[k]; G.addNode(docId); try { String terms[] = wrapper.getTerms(docId); if (terms == null) { continue; } for (int i = 0; i < terms.length; i++) { allterms.put(terms[i], ""); } } catch (IOException e) { throw new SystemException("Could not get the terms for the given doc id."); } } Set set = allterms.keySet(); Iterator it = set.iterator(); int scale = Integer.parseInt((String) SystemProperties.getProperty(SystemConstants.MAXINT)); while (it.hasNext()) { String term = (String) it.next(); int[] posting = getPosting(term, docIdArr); int len = posting.length; if (len <= THRESHOLD) { for (int j = 0; j < len; j++) { int docId = posting[j]; for (int k = j + 1; k < len; k++) { int docId2 = posting[k]; if (docId != docId2) { if (docId > docId2) { int temp = docId2; docId2 = docId; docId = temp; } } Integer obj = new Integer(docId * maxDocCount + docId2); Integer similarity = ((Integer) cosineCache.get(obj)); int cosinesimilarity = 0; if (similarity == null) { cosinesimilarity = (int) Math.floor(cosineSimilarity(docId, docId2) * scale); cosineCache.put(obj, new Integer(cosinesimilarity)); } else { cosinesimilarity = similarity.intValue(); } G.add(docId, docId2, cosinesimilarity); } } } } return G; } private int[] getPosting(String term, int docIdArr[]) throws SystemException { int postingArr[] = null; try { postingArr = wrapper.getPostingArray(term); } catch (IOException e) { throw new SystemException("unable to read the index"); } int[] selectedPosting = new int[postingArr.length]; int len = postingArr.length; int j = 0; int count = 0; // for each document for (int i = 0; i < docIdArr.length; i++) { int temp = docIdArr[i]; while (j < len) { //int temp = ((Integer)postingArr[j]).compareTo(docIdArr[i]); if (temp == postingArr[j]) {// equal selectedPosting[count++] = docIdArr[i]; j++; break; } else if (postingArr[j] < temp) { // if posting doc id is less // than the current doc id j++; } else { break; // if posting doc id > current doc id./ } } } int returnArr[] = new int[count]; for (int i = 0; i < count; i++) { returnArr[i] = selectedPosting[i]; } return returnArr; } /** * This function may exchange the references of I1 or I2. The objective is * that out of I1 and I2 , the one which is close to Il should be assigned * to I1, and the one which is close to Ir should be assigned to I2. * * @param Il * The left index * @param Ir * The right index * @param I1 * The first index * @param I2 * The second index */ private void OrderCluster(ShortIndex Il, ShortIndex Ir, ShortIndex I1, ShortIndex I2) throws SystemException { HashMap mL = centerofMass(Il); HashMap mR = centerofMass(Ir); HashMap m1 = centerofMass(I1); HashMap m2 = centerofMass(I2); double similarity1 = cosineSimilarity(mL, m1) * cosineSimilarity(mR, m2); double similarity2 = cosineSimilarity(mR, m1) * cosineSimilarity(mL, m2); if (similarity2 > similarity1) { ShortIndex temp = I2; I2 = I1; I1 = temp; } } /** * Returns the cosine similarity between two TFIDF vectors. * * @param m1 * TFIDF vector for the first document * @param m2 * TFIDF vector for the second document * @return cosine similarity * @throws SystemException */ private double cosineSimilarity(HashMap m1, HashMap m2) throws SystemException { Iterator it1 = m1.keySet().iterator(); int i = 0, j = 0; // numerator and denominator of the cosine similarity formula double numerator = 0.00, denominator = 0.00; double sumOfSq1 = 0.00, sumOfSq2 = 0.00; while (it1.hasNext()) { Object o = it1.next(); if (m2.containsKey(o)) { Double oldtfidfScore = (Double) m1.get(o); Double newtfidfScore = (Double) m2.get(o); numerator += oldtfidfScore.doubleValue() * newtfidfScore.doubleValue(); } sumOfSq1 += Math.pow(((Double) m1.get(o)).doubleValue(), 2); } it1 = m2.keySet().iterator(); while (it1.hasNext()) { Object o = it1.next(); sumOfSq2 += Math.pow(((Double) m2.get(o)).doubleValue(), 2); } denominator = (Math.sqrt(sumOfSq1) * Math.sqrt(sumOfSq2)); if (denominator == 0.00) return (m1.size() == m2.size()) ? 1 : 0; else return numerator / denominator; } /** * Calculate the center of mass for the given set of documents. * * @param i * the set of documents * @return a TFIDF vector corresponding to the Centre of mass. * @throws SystemException */ private HashMap centerofMass(ShortIndex i) throws SystemException { Iterator it = i.getIterator(); HashMap termmap = new HashMap(); while (it.hasNext()) { int docid = ((Integer) it.next()).intValue(); HashMap h = new HashMap(); try { h = wrapper.getTermTFIDFMap(docid); } catch (Exception e) { throw new SystemException(e.toString()); } Iterator iter = h.keySet().iterator(); while (iter.hasNext()) { Object o = iter.next(); if (termmap.containsKey(o)) { Double oldtfidfScore = new Double( ((Double) h.get(o)).doubleValue() * i.size() ); Double newtfidfScore = (Double) termmap.get(o); termmap.put(o, new Double((oldtfidfScore.doubleValue() + newtfidfScore.doubleValue())/i.size())); } else { termmap.put(o, new Double( ((Double) h.get(o)).doubleValue() / i.size() ) ); } } } return termmap; } /** * Getter for the odl document ids versus new document ids. * * @return Hashmap for old docids vs. new doc ids. */ public HashMap getOrderedDocIds() { return oldNewDocid; } /** * Calculate the similarity between two documents * * @param docId1 * document first * @param docId2 * document second * @return cosine similarity * @throws SystemException */ private double cosineSimilarity(int docId1, int docId2) throws SystemException { HashMap id1 = wrapper.getTermTFIDFMap(docId1); HashMap id2 = wrapper.getTermTFIDFMap(docId2); double cs = cosineSimilarity(id1, id2); return cs; } public static void main(String args[]) { ShortIndex i = new ShortIndex(); try { i.add(new Integer(94)); i.add(new Integer(249)); i.add(new Integer(200)); i.add(new Integer(230)); i.add(new Integer(223)); i.add(new Integer(203)); String path = (String) (SystemProperties.getProperty(SystemConstants.INDEXDIRPATH)).trim(); IndexerWrapper wrapper = LuceneWrapper.getIndexWrapper(path); if (wrapper == null) { System.exit(0); } System.out.println(wrapper.getPath(94)); System.out.println(wrapper.getPath(249)); OrderIndex order = new OrderIndex(wrapper); ShortIndex I1 = new ShortIndex(); ShortIndex I2 = new ShortIndex(); order.splitIndex(i, I1, I2); } catch (SystemException e) { e.printStackTrace(); } catch (IOException e) { } } } p7_submission/src/OrderIndex/Graph.java0100644000076400007640000000171410227155416020270 0ustar sandeshsandesh/* * Created on 26 Jun, 2004 * * TODO To change the template for this generated file go to * Window - Preferences - Java - Code Style - Code Templates */ package OrderIndex; /** * @author anonymous * This class implements scalable graph. */ public abstract class Graph { /** * */ protected String graphFile=""; public Graph(String gfile) { graphFile = gfile; } public abstract void add(int node1 , int node2 , long weight) throws utils.SystemException; /** * This function performs partitioing of the graph based on edge weights. * @param num The no. of partitions to perform. * * @return Returns an array of Graph, each represents a partition of graph. */ public abstract ShortIndex[] partition(int num) throws utils.SystemException; /** * Returns the centroid of this graph. * @return Centrid * TODO Note that what is centroid has to be defined properly */ public Object getCentroid() { return null; } } p7_submission/src/OrderIndex/ScalableGraph.java0100664000076400007640000005415510227155417021731 0ustar sandeshsandesh/* * Created on 10 Apr, 2005 * * TODO To change the template for this generated file go to * Window - Preferences - Java - Code Style - Code Templates */ package OrderIndex; import java.io.BufferedWriter; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.FileWriter; import java.io.IOException; import java.util.ArrayList; import java.util.Arrays; import java.util.Comparator; import java.util.HashMap; import java.util.Random; import utils.ProcessInvoker; import utils.SystemException; /** * @author abhishek Class implementing Scalable graph */ public class ScalableGraph extends MetisGraph { /** * @author abhishek Class implementing a structure of edge */ private class Record { public int node1; //FIRST PREF FOR SORTING public int node2; //FIRST PREF FOR SORTING public long weight; public Record() { node1 = node2 = 0; weight = 0; } public byte[] getBytes() { byte[] ans = new byte[16]; long temp = 0xff; long temp2; for (int i = 0; i < 4; i++) { temp2 = (node1 & temp); ans[i] = (byte) (temp2 >>> i * 8); temp <<= 8; } temp = 0xff; for (int i = 0; i < 4; i++) { temp2 = (node2 & temp); ans[i + 4] = (byte) (temp2 >>> i * 8); temp <<= 8; } temp = 0xff; for (int i = 0; i < 8; i++) { temp2 = (weight & temp); ans[8 + i] = (byte) (temp2 >>> i * 8); temp <<= 8; } return ans; } public void setBytes(byte[] b) { node1 = 0; int temp = 0; byte by; for (int i = 0; i < 4; i++) { by = b[i]; temp = (by < 0) ? (255 - ~by) : by; node1 |= temp << i * 8; } node2 = 0; for (int i = 0; i < 4; i++) { by = b[i + 4]; temp = (by < 0) ? (255 - ~by) : by; node2 |= temp << i * 8; } weight = 0; long temp2; for (int i = 0; i < 8; i++) { by = b[i + 8]; temp2 = (by < 0) ? (255 - ~by) : by; weight |= temp2 << i * 8; } } /** * ONLY CHECK NODE1 AND NODE2 FOR EQUALITY * * @param r1 * @return true when records are equal */ public boolean equals(Record r1) { return (node1 == r1.node1 && node2 == r1.node2); } /** * Copy Records from source record to destination record. Note that the * pamaters should not be null; * * @param dest * The destination record */ public void copyTo(Record dest) { dest.node1 = this.node1; dest.node2 = this.node2; dest.weight = this.weight; } public int getSize() { return 16; } public String toString() { return "NODE1: " + node1 + " NODE2: " + node2 + " WEIGHT: " + weight + "\n"; } }; /** * @author abhishek Class implementing a comparator for Record Class Objects */ private class myComparator implements Comparator { public int compare(Object o1, Object o2) { Record r1 = (Record) o1; Record r2 = (Record) o2; if (r1.node1 < r2.node1) return -1; else if (r1.node1 > r2.node1) return 1; else { if (r1.node2 < r2.node2) return -1; else if (r1.node2 > r2.node2) return 1; else return 0; } } } /** * Size of chunks to make cache files, which finaly undergoes merge sort */ int BUFFSIZE = 1000; /** * Prefix of temporary files */ String cachefileprefix = "cache"; /** * List of cache files maintained for merge sort */ ArrayList cachefiles; /** * To maintain records in main memory */ Record[] records; /** * cacheCount is number of entries present in records cache. rotations is * number of caches files made. */ int cacheCount = 0; int rotations = 0; /** * Folder containing Required for making temporary files. */ String tempfolder = ""; /** * @param gfile * Final graph file name * @param tempf * Folder for constructing temporary files * @param buffersize : * Size of chunks to make cache files, which finaly undergoes * merge sort */ public ScalableGraph(String gfile, String tempf, int buffersize) { super(gfile); this.tempfolder = tempf; this.BUFFSIZE = buffersize; Initialize(); } /** * * @param gfile * Final graph file name * @param tempf * Folder for constructing temporary files */ public ScalableGraph(String gfile, String tempf) { super(gfile); this.tempfolder = tempf; Initialize(); } /** * Initializating various attributes */ void Initialize() { cacheCount = 0; rotations = 0; cachefiles = new ArrayList(); records = new Record[BUFFSIZE]; for (int i = 0; i < this.BUFFSIZE; i++) records[i] = new Record(); } /** * ADDING TO RECORD THE EDGE VALUES No edge Dupication check is made. */ public void add(int node1, int node2, long weight) throws SystemException { if (cacheCount == this.BUFFSIZE) { //store all in cache. rotations++; saveall(); cacheCount = 0; add(node1, node2, weight); } else { //if (addNode(node1) || addNode() ) addNode(node1); addNode(node2); Long l1, l2; l1 = (Long) forMap.get(new Long(node1)); l2 = (Long) forMap.get(new Long(node2)); records[cacheCount].node1 = l1.intValue(); records[cacheCount].node2 = l2.intValue(); records[cacheCount].weight = weight; cacheCount++; if (cacheCount == this.BUFFSIZE) { rotations++; saveall(); cacheCount = 0; records[cacheCount].node1 = l2.intValue(); records[cacheCount].node2 = l1.intValue(); records[cacheCount].weight = weight; cacheCount++; } else { records[cacheCount].node1 = l2.intValue(); records[cacheCount].node2 = l1.intValue(); records[cacheCount].weight = weight; cacheCount++; } edges++; } } /** * To add a node */ public void addNode(int newnode) { Long nodeid = new Long(newnode); if (!forMap.containsKey(nodeid)) { Long index = new Long(nodes); forMap.put(nodeid, index); revMap.add(nodes, nodeid); nodes++; } } /** * To add a bunch of nodes */ public void addNodes(int[] newnodes) { Long index, nodeid; for (int i = 0; i < newnodes.length; i++) { nodeid = new Long(newnodes[i]); if (forMap.containsKey(nodeid)) continue; index = new Long(nodes); forMap.put(nodeid, index); revMap.add(nodes, nodeid); nodes++; } } /** * This method saves all the data of record in cache file * * @throws SystemException */ public void saveall() throws SystemException { String outfile = tempfolder + cachefileprefix + rotations; this.cachefiles.add(rotations - 1, outfile); Arrays.sort(records, new myComparator()); byte[] record; try { FileOutputStream fileout = new FileOutputStream(outfile); for (int i = 0; i < records.length; i++) { record = records[i].getBytes(); fileout.write(record); } fileout.close(); } catch (IOException e) { throw new SystemException("Error in caching the records in file:" + outfile); } } /** * This method saves live data of records in cache file */ public void save() throws SystemException { String outfile = tempfolder + cachefileprefix + rotations; this.cachefiles.add(rotations - 1, outfile); Record[] trecords = new Record[cacheCount]; for (int i = 0; i < cacheCount; i++) trecords[i] = records[i]; Arrays.sort(trecords, new myComparator()); byte[] record; try { FileOutputStream fileout = new FileOutputStream(outfile); for (int i = 0; i < cacheCount; i++) { record = trecords[i].getBytes(); fileout.write(record); } fileout.close(); } catch (IOException e) { throw new SystemException("Error in caching the records in file:" + outfile); } } /** * This method partitions the graph */ public ShortIndex[] partition(int num) throws SystemException { flush(); mergesort(); contructGraphFile(); //printGraphFile(); return super.partition(num); //return null; } /** * To convert the graph file to metis format */ public void contructGraphFile() throws SystemException { FileInputStream istream; BufferedWriter bufwriter; FileWriter writer; int retStatus; Record record = new Record(); byte[] b = new byte[record.getSize()]; HashMap hmap = new HashMap(1000); try { istream = new FileInputStream((String) cachefiles.get(0)); writer = new FileWriter(graphFile); bufwriter = new BufferedWriter(writer); bufwriter.write(nodes + " " + edges + " 1"); //ONE TIME READING IS REQUIRED OUTSIDE FOR LOOP retStatus = istream.read(b); if (retStatus != -1) { record.setBytes(b); for (int i = 0; i < nodes; i++) { bufwriter.write("\n "); if (retStatus == -1 || record.node1 != i) continue; hmap.clear(); do { //if (null == hmap.put(new Integer(record.node2),new // Integer(1))) bufwriter.write(record.node2 + 1 + " " + record.weight + " "); retStatus = istream.read(b); if (retStatus == -1) break; record.setBytes(b); } while (record.node1 == i); } } bufwriter.close(); istream.close(); } catch (Exception e) { throw new SystemException(e.getMessage()); } } /** * Flushes the remaining graph data in file. */ void flush() throws SystemException { rotations++; save(); cacheCount = 0; } /** * This will do the merge sort of all files. */ void mergesort() throws SystemException { int size; String file1, file2, outfile; ArrayList tarray; int previndex = 0; //INDEX TO TRAVERSE OLD CACHE FILES int index = 0; //CURRENT INDEX TO STORE NEW CACHE FILES //size = current size of cache files. size = cachefiles.size(); if (size == 1) { file1 = (String) cachefiles.get(0); outfile = mergefilesWithDupEliminate(file1, file1); cachefiles.add(0, outfile); return; } while (size > 1) { tarray = new ArrayList(); while (previndex < size) { file1 = (String) cachefiles.get(previndex++); file2 = ""; if (previndex < size) { file2 = (String) cachefiles.get(previndex++); } if (size == 2) outfile = mergefilesWithDupEliminate(file1, file2); else outfile = mergefiles(file1, file2); if (outfile.equals("")) { tarray.add(index++, file1); cachefiles.remove(cachefiles.size() - 1); } else tarray.add(index++, outfile); } //ONE LAYER COMPLETE //PURGE OLD CACHE FILES AND ACTIVATE NEW ONES deleteFiles(cachefiles); cachefiles.clear(); cachefiles = tarray; size = cachefiles.size(); previndex = index = 0; } } /** * To print the graph edges into a file in ascii format. Used only for * debugging purpose * * @throws SystemException */ void printGraphFile() throws SystemException { FileInputStream istream; BufferedWriter bufwriter; FileWriter writer; int retStatus; Record record = new Record(); byte[] b = new byte[record.getSize()]; try { istream = new FileInputStream((String) cachefiles.get(0)); writer = new FileWriter(graphFile); bufwriter = new BufferedWriter(writer); bufwriter.write(nodes + " " + edges + " 1\n"); //ONE TIME READING IS REQUIRED OUTSIDE FOR LOOP retStatus = istream.read(b); while (retStatus != -1) { record.setBytes(b); bufwriter.write(record.node1 + " " + record.node2 + " " + record.weight + "\n"); retStatus = istream.read(b); } bufwriter.close(); istream.close(); } catch (Exception e) { throw new SystemException(e.getMessage()); } } /** * Delete files * * @param list : * list of files to be deleted */ void deleteFiles(ArrayList list) throws SystemException { for (int i = 0; i < list.size(); i++) ProcessInvoker.invoke("rm -f " + list.get(i)); } /** * Merges two files as per sorting Delete duplicate edges. Also eliminate * duplicates if same file is given in two parameter Refresh count of no. of * edges. * * @param file1 * @param file2 * @return filename of new file * @throws SystemException */ String mergefilesWithDupEliminate(String file1, String file2) throws SystemException { if (file1.equals("") || file2.equals("")) { if (file1.equals("")) return ""; else return ""; } rotations++; FileInputStream instream1, instream2; FileOutputStream ostream; String outfile = tempfolder + cachefileprefix + rotations; Record r1, r2, prev1, prev2; r1 = new Record(); r2 = new Record(); prev1 = new Record(); prev2 = new Record(); byte[] b1, b2; b1 = new byte[r1.getSize()]; b2 = new byte[r2.getSize()]; int retstatus1, retstatus2; edges = 0; try { ostream = new FileOutputStream(outfile); instream1 = new FileInputStream(file1); retstatus1 = instream1.read(b1); if (file1.equals(file2)) { retstatus2 = -1; instream2 = null; } else { instream2 = new FileInputStream(file2); retstatus2 = instream2.read(b2); } myComparator comparator = new myComparator(); while (retstatus1 != -1 && retstatus2 != -1) { r1.setBytes(b1); r2.setBytes(b2); if (comparator.compare(r1, r2) < 0) {//r1 < r2 if (!r1.equals(prev1)) { ostream.write(r1.getBytes()); edges++; r1.copyTo(prev1); } retstatus1 = instream1.read(b1); } else if (comparator.compare(r1, r2) > 0) { if (!r2.equals(prev2)) { ostream.write(r2.getBytes()); edges++; r2.copyTo(prev2); } retstatus2 = instream2.read(b2); } else { if (!r1.equals(prev1)) { ostream.write(r2.getBytes()); edges++; } retstatus1 = instream1.read(b1); retstatus2 = instream2.read(b2); r1.copyTo(prev1); r2.copyTo(prev2); } } if (retstatus1 != -1) { while (retstatus1 != -1) { r1.setBytes(b1); if (!r1.equals(prev1)) { ostream.write(r1.getBytes()); edges++; r1.copyTo(prev1); } retstatus1 = instream1.read(b1); } } else if (retstatus2 != -1) { while (retstatus2 != -1) { r2.setBytes(b2); if (!r2.equals(prev2)) { ostream.write(r2.getBytes()); edges++; r2.copyTo(prev2); } retstatus2 = instream2.read(b2); } } } catch (Exception e) { throw new SystemException(e.getMessage()); } edges /= 2; return outfile; } /** * Merges two files as per sorting Delete duplicate edges * * @param file1 * @param file2 * @return filename of new file * @throws SystemException */ String mergefiles(String file1, String file2) throws SystemException { if (file1.equals("") || file2.equals("")) { if (file1.equals("")) return ""; else return ""; } rotations++; FileInputStream instream1, instream2; FileOutputStream ostream; String outfile = tempfolder + cachefileprefix + rotations; Record r1, r2; r1 = new Record(); r2 = new Record(); byte[] b1, b2; b1 = new byte[r1.getSize()]; b2 = new byte[r2.getSize()]; int retstatus1, retstatus2; try { instream1 = new FileInputStream(file1); instream2 = new FileInputStream(file2); ostream = new FileOutputStream(outfile); retstatus1 = instream1.read(b1); retstatus2 = instream2.read(b2); myComparator comparator = new myComparator(); while (retstatus1 != -1 && retstatus2 != -1) { r1.setBytes(b1); r2.setBytes(b2); if (comparator.compare(r1, r2) <= 0) {//r1 < r2 ostream.write(r1.getBytes()); retstatus1 = instream1.read(b1); } else if (comparator.compare(r1, r2) > 0) { ostream.write(r2.getBytes()); retstatus2 = instream2.read(b2); } } if (retstatus1 != -1) { while (retstatus1 != -1) { r1.setBytes(b1); ostream.write(r1.getBytes()); retstatus1 = instream1.read(b1); } } else if (retstatus2 != -1) { while (retstatus2 != -1) { r2.setBytes(b2); ostream.write(r2.getBytes()); retstatus2 = instream2.read(b2); } } } catch (Exception e) { throw new SystemException(e.getMessage()); } return outfile; } public static void main(String[] args) { String gfile = "/home/abhishek/courses/webmin/temp/graph.txt"; String tfolder = "/home/abhishek/courses/webmin/temp/"; ShortIndex[] sindices; try { ScalableGraph sgraph = new ScalableGraph(gfile, tfolder, 100); Random random = new Random(); random.setSeed(12); /* * int count = 1; while(count <= 5) { sgraph.add(count , 10 - count + * 1 , 40 ); count ++; } * * count = 11; while(count <= 15) { sgraph.add(count , 20 - count + * 11 , 50 ); count ++; } */ //int[] i = { // 215,1,54,2,45,1,5,5,7,2,5,7,67,6874,864,4566,74,746,744,2,45,1,54,2,454,514,2,45,1,54,2,4}; sgraph.addNode(100); sgraph.addNode(100); sgraph.addNode(200); sgraph.addNode(300); sgraph.addNode(400); //sgraph.addNodes(i); //sgraph.addNode(600); //sgraph.addNode(800); sgraph.add(100, 200, 2); sgraph.add(200, 100, 2); sgraph.add(100, 200, 2); sgraph.add(300, 400, 2); sgraph.add(200, 100, 2); sgraph.add(100, 200, 2); sgraph.add(300, 400, 2); //sgraph.add(100,200,2);sgraph.add(100,200,2);sgraph.add(100,200,2);sgraph.add(100,200,2);sgraph.add(100,200,2); sgraph.add(200, 100, 2); sgraph.add(400, 300, 2); //sgraph.add(200,400,5); //sgraph.add(400,300,2); //sgraph.add(300,100,5); //sgraph.add(300,100,5); //sgraph.flush(); //sgraph.mergefiles(tfolder+ "cache1" , tfolder+ "cache2" ); sindices = sgraph.partition(2); System.out.println(sindices[0]); System.out.println(sindices[1]); } catch (SystemException e) { System.out.println(e.getMessage()); } //sgraph.test(); } }p7_submission/report.txt0100664000076400007640000000736210227404321015605 0ustar sandeshsandeshProject: Reordering of doument ids using the Blelloch's approach to estimate the improvement in compression of index using gamma encoding. Students: 1. Abhishek Seth (04329001) 2. Kaushal Mittal(04329024) 3. Sandesh Tawari(04329014) We have implemented and tested the ideas presented in Blelloch's paper on document reordering. Blelloch's Algorithm is about top down clustering of documents based on cosine similarity measure and reassigning the document ids such that the documents in the same cluster get near by doc ids. We have used TFIDF scores for calculating the Center of mass and calculate (document,document) similarity using cosine measures. We have calculated the centere of mass of a cluster of documents as an average of the TFIDF scores of documents in the cluster. But the downside of using TFIDF is that frequent terms get lower score and hence document pairs sharing these terms get low similarity scores. So we also experimented with use of Jaccard similarity measure instead of cosine measure. Results ========= Data set : `Reuters20578' Similarity measure: Cosine ________________________._______._______._______._______._______._______._______. Corpus size | Run1 | Run2 | Run3 | Run4 | Run1 | Run2 | Run3 | (#documents) |(1100) |(1100) |(1100) |(1100) |(20578)|(20578)|(20578)| ________________________|_______|_______|_______|_______|_______|_______|_______| Inv-index size w/o any | 267KB | 267KB |267KB | 267KB |4883KB |4883KB |4883KB | encoding | | | | | | | | ________________________|_______|_______|_______|_______|_______|_______|_______| Inv-index size w/ gamma | 86KB |86KB |86KB | 86KB |1990KB |1990KB |1991KB | encoding and using | | | | | | | | lucene assigned or | | | | | | | | random doc-ids | | | | | | | | ________________________|_______|_______|_______|_______|_______|_______|_______| Inv-index size w/ gamma | 79KB |80KB |80KB | 81KB |1779KB |1802KB |1804KB | encoding and using | | | | | | | | reordered doc-ids | | | | | | | | ________________________|_______|_______|_______|_______|_______|_______|_______| Similarity measure: Jaccard ________________________._______._______. Corpus size | | | (#documents) |(1100) |(20578)| ________________________|_______|_______| Inv-index size w/o any | 267KB |4883KB | encoding | | | ________________________|_______|_______| Inv-index size w/ gamma | 86KB |1991KB | encoding and using | | | lucene assigned or | | | random doc-ids | | | ________________________|_______|_______| Inv-index size w/ gamma | 82KB |1862KB | encoding and using | | | reordered doc-ids | | | ________________________|_______|_______| Data Set : `Newsgroup-18828' Corpus size - 18822 documents Without compressiion - 8941 KB Compression with - 3731 KB Random doc ids Compression with - 3305 KB Reordered doc ids The improvement in the compression for the corpus with 18822 documents using the cosine similarity measure is 11.42 %. Summary Approximate improvement in compression(through gamma encoding and cosine measure) after document reordering for 1100 documents was 6.4% and for 20578 documents was 9.8%. It took on an average 7 minutes for 1100 documents and 3 hrs 58 mins for 20578 documents before optimisations. After code optimisation, use of ramfs for storing the temporary files generated for graphs, and using jaccard similarity, the running time reduced to 59 secs for 1100 documents and 53 minutes for 20578 documents. p7_submission/Readme.txt0100664000076400007640000000444410227375617015504 0ustar sandeshsandeshProject: Reordering of doument ids using the Blelloch's approach to estimate the improvement in compression of index using gamma encoding. Students: 1. Abhishek Seth (04329001) 2. Kaushal Mittal(04329024) 3. Sandesh Tawari(04329014) Project artifacts: 1. IndexerWrapper.java - An interface providing the abstraction for an inverted index reader . To Use a different indexer than lucene, you just need to implement the interface . 1.1 LuceneWrapper.java - It implements the IndexerWrapper for Lucene. 2. GammaCode.java - This class provides methods for encoding and decoding using Gamma code. 3. CompressionStats - This cl;ass generates a summary of the compression gains. It takes the mapping from old doc ids to new doc ids and calculates the length of posting for old doc ids and new doc ids, using gamma coding. 4. OrderIndex - This class implements the Blelloch's algorithm for document reordering. 5. Graph.java - It is an abstraction for the document document graph. 5.1 MetisGraph.java - It is an implementation of the Graph.java for graph formation and partitioning using Metis(graph partitioning tool). 5.2 ScalableGraph.java - It is a scalable implementation of MetisGraph.java, for large size corpus. It does not keep the graph in memory but uses disk writes and external merge sort to finally generate the graph. 6. RandomSampler - This is a random sampler that returns one out of every N^{RHO} elements from a set of size N. Apart from this we have some utility classes - 1. SystemProperties.java - loads the configuration/property file. 2. Test.java - This can be used to run the Blellochs algorithm 3. Indexfiles.java -This provides the code for generating the index using Lucene. How to execute the code: 1. Check the settings in the resources/systemproperties.txt . Make sure that the paths and settings are as per your machine. 2. use the following command to create the index using the following command java -classpath lucene-1.4.3.jar:blelloh.jar demo.IndexFiles Do not use the default lucene demo jar for creating index. We have made changes to the demo program available from lucene. 3. use the following command to reorder the document and get the statistics of compression gain using gamma coding. java -classpath lucene-1.4.3.jar:blelloch.jar demo.Test p7_submission/Readme.pdf0100664000076400007640000003554410227404631015430 0ustar sandeshsandesh%PDF-1.2 %쏢 6 0 obj <> stream x]Ks5߰0ǾT!#!p@ $wo(8'U!9Rx3ꑾԚٍF;VC-jF7yvvøWjrAOjWz巺aގ~7lחk箟_a+s;ɃЏp`>уWɃ"lw;ڏϏImh`6ߣ]?hݮ\M9*u d GɃUrUH5>9sʤ٣xHC،#XFX'z`wkHTry5t P藺0XkA>DRk+6%5ǧdZ8WGpp!$P qrYq> p:k4֋ HIc5ExqbXhaYD~vJ؜>Xb[  M씜! t߼w2uc>2% a 3|978.|9qQpx2'-f"88:t\LlIM0ts|Q 1MERH4[ za+b;1"a7 +PI:gǥʙ9|[ӅJgUibyd(YtAlmʞRxu%6fi=4}ؾ8mC%1g t| s9Q/wm0xߣFhB 6,ZD' [dj@lђ aޕnym܅Tqgت:ݮ`^L`,rs|/K QQD 0K0b \6:BRrӗxXj=&g=k7<7ゲZvX-)͖'k/zTK20{TKEgѾL(9 kɻV"B[ؽ0񔓼XKd`WKODi-Bi3I#Ą! fc˘Z_Ca-N- 3{y^40pRhKޜx\ O1|4?Jcʹ[(n1~M@yyV6:|U>dJF?ˠp\P;^}So+dh]qlƧ$Jat~0޹UQI0vvצwR<Js`Ket%^:[~ kJ PpBo)Y([I8O7<'_v>RTD&ymUFWf1x/4a!0_k5&'wH93ySyv8;^ÑP YFDc߁&1ű3Jpe9{r2KIPc\Q^善'>AiQ;<_EmFSAf(w.]?~)#3'߱Uշ+BroEJÈQs-/lRF3Ϣ9{>+3\DL5$VOv~XI("T)5Eo(6s0]YTJ5rQ]F^-R;y(+9sHkwͨ) .FXk+~Wf 䱝_)?N3ڕ.ñ'> /Contents 6 0 R >> endobj 3 0 obj << /Type /Pages /Kids [ 5 0 R ] /Count 1 >> endobj 1 0 obj <> endobj 4 0 obj <> endobj 20 0 obj <> endobj 21 0 obj <> endobj 12 0 obj <> endobj 11 0 obj <>stream xcd`ab`dd s ) N+Kf!Cw_JYe|O.^"=R{fFưʢdM#CJԜr5bϼd= Q\RT\WUchP= )$4@`a~p?*X6\+\oZWR endstream endobj 22 0 obj 223 endobj 9 0 obj <> endobj 8 0 obj <>stream xTkPWMOM( Atz\䡓 `dR F !!,MR#.d|"0$ѨuS&$Fp3fn}=|B /DQdC!>QnNbzA"Pt/iMHGf/:O8]7d] ͜ ficrͥ`k Ya򧸤ȒYc.(f׋7t076!+ے^YӉ#'[j[;l?Xr/Q,z-AR ED AIh9P2ZQ JAGϣ4 @P@M,E^Kʽ$:O VXL$#0#ckGyV_AoPAݣ]G މ4g#cM 5ʎ:GZ>,P ZZ*$cSi.m;'#y "zA ܾ.)a&hhHpoI4Y4@s{b`qCڗ2}mK@oyaJV_') `Tg,;pw]sݼkBtёJ&_5/|&;ȼ@:|JeJq7yO Lָ9^{F ܅xQjUK#|ZlDq]R T?qC>I`Iٔ" [7xO,,Efйd>O e g8迩{wuM]uU7h؂^A|KWX\ a Q8eRX^ovxOB_[ endstream endobj 23 0 obj 1728 endobj 15 0 obj <> endobj 14 0 obj <>stream xW T׶MSU-aN7 8!(N( PD P#1 /!)MLT@hD12DE1juHPmTbnSt5[o-]uo9Ͼ boG c&O\"}RVfZOBP*XƼA&JN;Ln+lt+Q*q١Y9SӖz{A޳rCS.z׻wxŒK#2gK.^6{izVx@k4p.[BH5}߼-G|\[^ (phc]նե8.~b >$d $=H"LHK;d#IBI/C" қĒH2!qdBx2 %S$BiDOB0Fu҅hwDI7BWE72BN䈂("vv$dea_np6]**RUz%']Nv03צVi5rJr9y3vRU:5ueWβY&N&X'sZ8 uC$%.@A.Q :K,t3Y?*@^Ll` Xxȱ|=ơW )r:SifY\40S_Z__"OM2{V} RXbnUJSX(@ZN#t',Ǒ _0c$GGxXЃ{ JȅZY0gхǫ#nIȳp[UɃ!NE,>-!7p3C<Ҩ'rXEckwy fQUv\7K r/5L1%)L#Mn{If\ZΛhynaWR)LO:XSlK-J_ZWQ .]R~UQmۘ2 {S~F}(Rx1o%nϛM޶wUh` {vߊ9~MfwͥSFGK8yzKH@U $%HTl'%dǞPyDX @!ܓW}bRif_}UTA[g֠b/{{*T zvO.C=.w̱`ɷe7k;;k[˽6-zV OstKFmWha4Yx/2"%=[yN vaA6R .jmơ!>޼Mo`[1+ A،kܺihi8BySZGQzG*7]lN=/RЪ=+/UTMZYvӄsßn/V*&Ro:(a!Ca 6 AJν:D^mfwC.ըk X% M7UTgUCHO+HokYPmKكf |6~ؤ~N;A1/vmflPBW-K&`zcmfeV$K,tjKƾ~je+_EK~ZD?㘋L՟a1Ù\yL"0N)6vIyfqm oG0\'7H(M^L24$\ha}35u]/&K&ʽDyrK35{;^p$Ҳ 7G,(G"] N|l+-%>|xKN~BW-}EEↇύ兘iI 3Sϗ&~ V'o&Iݧ4G I|k w;,ωaɾ=oHS&|NpjpzQv-枚z%MGݦ)o*QIܐ)FE| Ύk[s]-J@(p^K 2*(%K];[K(in;; 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